Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30368
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 281 GGVASRCPHSGPPSMSRCSSPATLTTVS 198
           G  + R P++ P    +C+S  T+T  S
Sbjct: 734 GEASPRSPNASPSPAEQCASTTTITARS 761


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 371 GWGGSSGRCRHASV 412
           GWGG +G C   SV
Sbjct: 613 GWGGKAGPCAIKSV 626


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 371 GWGGSSGRCRHASV 412
           GWGG +G C   SV
Sbjct: 651 GWGGKAGPCAIKSV 664


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -2

Query: 268 PAAPTRGPPACPDARPQP 215
           P AP RG P  P   P P
Sbjct: 31  PQAPQRGSPPNPSQGPPP 48


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 277 PPRDAPLPSFGFTQEQVACVCEVL 348
           P  D P  SF   ++ V   CEVL
Sbjct: 158 PTDDEPYASFKAMEDSVGGKCEVL 181


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +3

Query: 648 YGTERRPLTVLRKSPDPSSATGISTTRIL 734
           Y    RP T+L  + DP  ++ +  T ++
Sbjct: 84  YNRVWRPDTILYNNADPQYSSAVINTNVI 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,145
Number of Sequences: 438
Number of extensions: 6256
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)