Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30368
         (743 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19870.1 68416.m02516 expressed protein                             33   0.26 
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    29   3.3  
At3g19290.1 68416.m02446 ABA-responsive element-binding protein ...    28   5.7  
At1g80810.1 68414.m09481 expressed protein similar to androgen-i...    28   5.7  
At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate syntha...    28   7.5  
At1g12040.1 68414.m01390 leucine-rich repeat family protein / ex...    28   7.5  
At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit, ...    27   9.9  

>At3g19870.1 68416.m02516 expressed protein 
          Length = 1117

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +1

Query: 298 PSFGFTQEQVACVCEVLQQA-----GNIDRLGRFLWSLPACERLHAHESVLKAKAMVAFH 462
           P+ GF ++  A  CE L+Q      G +  +   LWSL   ER HA ++ L     + ++
Sbjct: 144 PNHGFDRQARAIACECLRQLEKAFPGLLSDVAGHLWSLCQAERTHAVQAYLLLFTTIVYN 203

Query: 463 RGNFKELYRLLES 501
             N K    LL +
Sbjct: 204 VVNQKLKVSLLST 216


>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 277 GWPPAAPTRGPPACPDARPQPL 212
           G P +AP +GPP  P   P PL
Sbjct: 223 GKPASAPAKGPPGAPAPPPAPL 244


>At3g19290.1 68416.m02446 ABA-responsive element-binding protein 2
           (AREB2) almost identical (one amino acid) to GB:AAF27182
           from (Arabidopsis thaliana); contains Pfam profile
           PF00170:bZIP transcription factor; identical to cDNA
           abscisic acid responsive elements-binding factor (ABRE)
           mRNA, partial cds GI:6739282
          Length = 431

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 532 LQSLWLKAHYMEAERLRGRPLGSSWQIPGEA*IPPPQNDMGRRGDLLL 675
           L+S+W  A   +A  +   P  ++   PG A IPPP  ++ R+G L L
Sbjct: 68  LKSIWT-AEEAQAMAMTSAPAATAVAQPG-AGIPPPGGNLQRQGSLTL 113


>At1g80810.1 68414.m09481 expressed protein similar to
           androgen-induced prostate proliferative shutoff
           associated protein (GI:4559410) [Homo sapiens]; similar
           to bimD (GI:168025) [Emericella nidulans]
          Length = 826

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 575 GFGVGHSGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRSVL 703
           GFG      VGK RV   +PL +T ++G   SYC ++K   V+
Sbjct: 553 GFG---EDLVGK-RVNIWWPLDKTFYEGVIDSYCTRKKMHRVI 591


>At1g78580.1 68414.m09158 alpha, alpha-trehalose-phosphate synthase,
           UDP-forming, putative / trehalose-6-phosphate synthase,
           putative / UDP-glucose-glucosephosphate
           glucosyltransferase, putative similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 942

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 674 CFKEKSRSVLRDWYLHNPYPS 736
           C KE +  +   W+LH P+PS
Sbjct: 246 CLKEYNSKMKVGWFLHTPFPS 266


>At1g12040.1 68414.m01390 leucine-rich repeat family protein /
           extensin family protein (LRX1) similar to extensin-like
           protein [Lycopersicon esculentum]
           gi|5917664|gb|AAD55979; contains leucine-rich repeats,
           Pfam:PF00560; contains proline rich extensin domains,
           INTERPRO:IPR002965
          Length = 744

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 271 PPAAPTRGPPACPDARPQP 215
           PP  P   PP CP++ P P
Sbjct: 522 PPPPPPSPPPPCPESSPPP 540


>At5g64740.1 68418.m08141 cellulose synthase, catalytic subunit,
           putative similar to gi:2827141 cellulose synthase
           catalytic subunit (Ath-A), Arabidopsis thaliana
          Length = 1084

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 510 EVVRLQQPVQFLEVPPVEGDHGLRLQHRLVGVKTLACRQRPEEPPQPVYVAG 355
           E V +      L VPP  G HG R+    +   T+A   RP  P + + V G
Sbjct: 160 EDVEISSDRHALIVPPSLGGHGNRVHPVSLSDPTVAAHPRPMVPQKDLAVYG 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,569,954
Number of Sequences: 28952
Number of extensions: 423192
Number of successful extensions: 1464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)