Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30366
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    27   3.6  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    26   6.2  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    26   6.2  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   8.2  

>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 39  TLTSARLVHH*TLRGNKINFVHKLLNDVSLHVPRLPLVLFGDLFGFSDAGRLRP 200
           TL+S RL+H      +  + +   +    LH+P   L L+  +F F+ +GR+ P
Sbjct: 196 TLSSGRLLHLNLKDSDGNSSIQVRILFPGLHIPNCLLSLYNSIFAFT-SGRVIP 248


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 522 ERAPPGVAALMAGATRGRVPDACGAIVTADTAQLSTKL 409
           ERAPP ++  +AG   G +    GAI TA    + T+L
Sbjct: 43  ERAPPPLSHFIAGGVAGML----GAIATAPLDVVKTRL 76


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 163 SPKRTKGKRGTCKLTSFKSL 104
           S +RTKGK+G  K ++F+S+
Sbjct: 55  SNRRTKGKKGNGKASNFQSM 74


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 528 GDATSPAVALPRIKSDLDLNDATLFAVYCFI 620
           G  TS A  +P+I + + +  A L A+ CF+
Sbjct: 284 GRPTSGAKVVPQIHNTVTVQTAFLLAIICFL 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,408
Number of Sequences: 5004
Number of extensions: 49430
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)