Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30366
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306 32 0.40
05_05_0185 + 23064249-23064448,23064881-23064950,23065082-230651... 31 0.70
11_06_0485 + 24133312-24133585,24136352-24136492,24136593-241367... 31 0.92
05_06_0259 + 26733699-26733854,26733940-26734071,26734171-267343... 30 1.6
07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049 30 2.1
04_03_0716 + 18995712-18995904,18996511-18996614,18997280-189973... 29 3.7
06_01_1171 - 10007714-10009141 29 4.9
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 29 4.9
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799... 28 6.5
05_06_0211 + 26401495-26402224,26402932-26403014,26403295-264033... 28 8.6
03_05_0847 + 28186873-28188147 28 8.6
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 28 8.6
>05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306
Length = 433
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -2
Query: 407 RACGGRNRPPHNTPEALPARGTRPNAPKHP 318
R GGR PP P PARG P P HP
Sbjct: 99 RGAGGRRAPPRARP---PARGGAPRRPHHP 125
>05_05_0185 +
23064249-23064448,23064881-23064950,23065082-23065120,
23065639-23066067,23067322-23067627
Length = 347
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 217 ISRQRERRRDSPIDIQGQRAVRAGISRSACELRRGCFGAFGRVPR 351
I R + + P D +G + G++R + E+ GC GA GR R
Sbjct: 111 ILRMFHKEAEEPADDEGAAGKKQGMARDSDEVSPGCRGADGRCSR 155
>11_06_0485 +
24133312-24133585,24136352-24136492,24136593-24136742,
24136837-24136955,24137062-24137146,24137218-24137264,
24137422-24137520
Length = 304
Score = 31.1 bits (67), Expect = 0.92
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 322 CFGAFGRVPRAGSASGVLCGGRLRPP 399
C GA GR A +A G L GG LRPP
Sbjct: 10 CSGAGGRRAPAAAADGRLAGGVLRPP 35
>05_06_0259 +
26733699-26733854,26733940-26734071,26734171-26734341,
26734419-26734445,26734550-26734757,26735160-26735241,
26735384-26735492,26735640-26735756,26735828-26736160
Length = 444
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 312 KTRVLWCVRAGAACRERLGGVMRGAVATAAGPLAW 416
KT +W VR C+++L ++ G +A A P W
Sbjct: 76 KTYQIWPVRLAGPCKKKLKLMISGTIAAPASPDEW 110
>07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049
Length = 444
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = -2
Query: 437 PTRLSCPPS*RACGGRNRPPHNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALCPCI 258
P L PPS R G R PP TP PA P K P + A T P
Sbjct: 23 PPSLLLPPSPRLQGRRLTPPSCTP-GTPAALPSPGPDKEPEREAAGSGSGSATTPRSPA- 80
Query: 257 SIGESRLR--SRCR 222
+G S+L SR R
Sbjct: 81 QLGSSQLHRWSRAR 94
>04_03_0716 +
18995712-18995904,18996511-18996614,18997280-18997393,
18997819-18997824,18998041-18998097
Length = 157
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = +2
Query: 473 PRVAPAMSAATPGGARSTRR--RHLTCCRAA*D 565
PR A A +A G R+ RR RHL CC D
Sbjct: 18 PRAAAAAAARPAAGRRAPRRRSRHLRCCSGGGD 50
>06_01_1171 - 10007714-10009141
Length = 475
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +1
Query: 328 GAFGRVPRAGSASGVL------CGGRLRPPQAR*LGGQLSRVGRHDRS 453
G FG VP AG +GVL GG LR +A+ L +++ R D S
Sbjct: 410 GGFGHVPDAGELAGVLREVVGEAGGELR-ARAKELAARMAEAARGDGS 456
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/41 (46%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +2
Query: 278 CGLVSAVRLAS*DAGALVR-SGGCRVPGAPRGCYAGGGCDR 397
CG V AS A AL SGGCR G C GGG R
Sbjct: 327 CGCVDGFTAASPSAWALRNTSGGCR-RGVALDCAGGGGGSR 366
>02_02_0220 -
7992124-7992351,7992458-7992562,7993499-7993711,
7993937-7994196,7994425-7994701,7995226-7995371,
7995519-7995903,7996680-7996964
Length = 632
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 437 PTRLSCPPS*RACGGRNRPPHNTPEALPARGTRPNAP 327
P + P + GG+N+PPH P LP P P
Sbjct: 136 PRSKTMAPGRKMLGGKNKPPH-PPSVLPDPAATPCLP 171
>05_06_0211 +
26401495-26402224,26402932-26403014,26403295-26403369,
26403442-26403513,26403684-26403764,26403946-26404043,
26404694-26404819,26404931-26404979,26405352-26405547,
26406475-26406491,26406786-26406839,26406845-26407036
Length = 590
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/46 (41%), Positives = 21/46 (45%)
Frame = -2
Query: 437 PTRLSCPPS*RACGGRNRPPHNTPEALPARGTRPNAPKHPRLSSQA 300
P P S RA R RPP T LP RG R +P H SS +
Sbjct: 11 PAASVSPRSRRAA--RRRPP--TASRLPVRGARAASPLHASSSSSS 52
>03_05_0847 + 28186873-28188147
Length = 424
Score = 27.9 bits (59), Expect = 8.6
Identities = 24/82 (29%), Positives = 32/82 (39%)
Frame = -2
Query: 398 GGRNRPPHNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALCPCISIGESRLRSRCRL 219
GG PP + P LP+ +R R Q RLI + P + R R L
Sbjct: 149 GGTRSPPRSFPPPLPSMSSRDAPCLQMRPRRQDGRLIVDAVVVRPRGYLHARRQGGRLLL 208
Query: 218 IFQPDSWPQTSSIRKAK*ITKK 153
F S + S+ KA T+K
Sbjct: 209 SFVDCSAREQSAASKAAVATEK 230
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 217 FFSQIVGLRRPASEKPNR--SPKRTKGKRGTCKLTS 116
FFS P + P+ SP+RT RG C+LT+
Sbjct: 14 FFSGAHAAAHPRTRTPHHHCSPQRTHDARGRCRLTA 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,028,469
Number of Sequences: 37544
Number of extensions: 430929
Number of successful extensions: 1702
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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