Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30366
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)          30   2.2  
SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)               29   2.9  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          28   6.6  
SB_29930| Best HMM Match : Collagen (HMM E-Value=0.067)                28   6.6  
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     28   8.8  
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   28   8.8  
SB_21199| Best HMM Match : SBP (HMM E-Value=6)                         28   8.8  

>SB_46010| Best HMM Match : RNase_PH (HMM E-Value=3.00004e-41)
          Length = 376

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 389 NRPPHNTPEALPARGTRPNAPKHPRLSSQA-ERLIPA 282
           N PP +T EA P RGT      H  L+ +A + +IPA
Sbjct: 262 NFPPFSTGEARPLRGTSRREVGHGNLAQRALKNMIPA 298


>SB_37976| Best HMM Match : Tubulin (HMM E-Value=4.5e-18)
          Length = 553

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 205 IVGLRRPASEKPNRSPKRTKGKRGTCKLTSFKSLCT 98
           +VG+ +P  EKP +S K+T  K GT K T  +  CT
Sbjct: 225 LVGVLQPLGEKP-KSIKKTSKKVGTRKGTKEEKKCT 259


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 380 PHNTPEALPARGTRPNAPKHPRLSSQAERLIP 285
           P +TP ++P      N P HP LSS+ E  +P
Sbjct: 594 PASTPASIPESAN--NTPLHPSLSSKQETNVP 623


>SB_29930| Best HMM Match : Collagen (HMM E-Value=0.067)
          Length = 129

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 317 AGALVRSGGCRVPGAPRGCYAGGGC 391
           A  +   GGC   G   GC  GGGC
Sbjct: 71  ARVMAGCGGCEGGGGSGGCEGGGGC 95



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 335 SGGCRVPGAPRGCYAGGGC 391
           SGGC   G   GC  GGGC
Sbjct: 86  SGGCEGGGGCVGCEGGGGC 104


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 25/84 (29%), Positives = 32/84 (38%)
 Frame = -1

Query: 516  APPGVAALMAGATRGRVPDACGAIVTADTAQLSTKLAGLRRSQXXXXXXXXXXXGTRHPP 337
            A PG A    GA   + P+A    V A T   STK +G   ++            T  PP
Sbjct: 1640 AKPGAATAKPGAASAK-PEA----VPAKTGAASTK-SGPSAAKPGSTKSGTLSAKTGEPP 1693

Query: 336  ERTKAPAS*LASRTADTSPHRSLS 265
             RT A    L  +  +  P R  S
Sbjct: 1694 SRTPASRPALQKKAEENKPERPKS 1717


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -1

Query: 537  WRLLVERAPPGVAALMAGATRGRVPDACGAIVTADTAQLSTK 412
            W+L  E A  G A    GA    VPDA    +T DT  LST+
Sbjct: 2675 WKLEEELANAGSAWTRKGALL-EVPDALDPTMTQDTIPLSTQ 2715


>SB_21199| Best HMM Match : SBP (HMM E-Value=6)
          Length = 341

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = -1

Query: 537 WRLLVERAPPGVAALMAGATRGRVPDACGAIVTADTAQLSTK 412
           W+L  E A  G A    GA    VPDA    +T DT  LST+
Sbjct: 159 WKLEEELANAGSAWTRKGALL-EVPDALDPTMTQDTIPLSTQ 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,703,158
Number of Sequences: 59808
Number of extensions: 450057
Number of successful extensions: 1284
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)