Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30366
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57890.1 68416.m06453 tubulin-specific chaperone C-related co...    29   2.3  
At1g53670.1 68414.m06107 transcription factor-related similar to...    29   3.1  
At2g46920.2 68415.m05861 protein phosphatase 2C family protein /...    29   4.1  
At2g46920.1 68415.m05860 protein phosphatase 2C family protein /...    29   4.1  
At4g02540.1 68417.m00347 DC1 domain-containing protein contains ...    28   7.2  
At5g01060.1 68418.m00009 protein kinase family protein contains ...    27   9.5  
At3g22380.1 68416.m02825 expressed protein                             27   9.5  
At3g04560.1 68416.m00484 expressed protein                             27   9.5  

>At3g57890.1 68416.m06453 tubulin-specific chaperone C-related
           contains weak similarity to Tubulin-specific chaperone C
           (Tubulin-folding cofactor C) (CFC) (Swiss-Prot:Q15814)
           [Homo sapiens]
          Length = 573

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 383 PPHNTPEALPARGTRPNAPKHPRLSSQAERLIP 285
           PP + P+  P   T PN+  HPR  S    L+P
Sbjct: 12  PPPSAPDPEPNSSTNPNSVIHPRRVSFEHGLLP 44


>At1g53670.1 68414.m06107 transcription factor-related similar to
           pilin-like transcription factor [Homo sapiens]
           GI:5059062; contains Pfam profile PF01641: SelR domain
          Length = 202

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +3

Query: 240 TRLADRYTRTESGAGW---YQPFGLRAKTRV 323
           T L D  T+ +SG GW   YQP G   KT++
Sbjct: 119 TPLFDSSTKFDSGTGWPSYYQPIGNNVKTKL 149


>At2g46920.2 68415.m05861 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 856

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 237 QTRLADRYTRTESGAGWYQPFGLRAKTRVLWCV 335
           ++ LA  ++R   G  W   F L  +TRV W V
Sbjct: 225 KSTLARTFSRRSGGLSWMHRFFLHPETRVSWAV 257


>At2g46920.1 68415.m05860 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 856

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 237 QTRLADRYTRTESGAGWYQPFGLRAKTRVLWCV 335
           ++ LA  ++R   G  W   F L  +TRV W V
Sbjct: 225 KSTLARTFSRRSGGLSWMHRFFLHPETRVSWAV 257


>At4g02540.1 68417.m00347 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 822

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/45 (33%), Positives = 16/45 (35%)
 Frame = -2

Query: 401 CGGRNRPPHNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALC 267
           C G N   H      PA    P  PKHP L    + L   R   C
Sbjct: 306 CQGCNGKNHKEYNKAPAEIKHPFHPKHPLLLVSLQMLSSTRKCYC 350


>At5g01060.1 68418.m00009 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 499

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 202 VGLRRPASEKPNRSPKRTKGKRGTCKLTSFKSLCTK 95
           + ++RP S      P++TK    + KLT F   C++
Sbjct: 326 INVKRPMSPPSKNLPEKTKPATESLKLTPFGDACSR 361


>At3g22380.1 68416.m02825 expressed protein
          Length = 1550

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 383  GGCDRRRPXXXXXXXXXXXXTIAPHASGTRPRVAPAMSAATPGGARST 526
            GG + + P            +++ +ASG+    A A SAA  GG  ST
Sbjct: 1336 GGTNHQAPSPPMLVGSPSTSSVSKNASGSPRTTASASSAANKGGQAST 1383


>At3g04560.1 68416.m00484 expressed protein
          Length = 417

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 428 LSCPPS*RACGGRNRPPHNTPEALPARGTRPNAPK 324
           LS PP  ++   R++P  +TPE +P     P APK
Sbjct: 58  LSAPPVLKSALKRSKPSESTPEPVP----EPEAPK 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,674,053
Number of Sequences: 28952
Number of extensions: 285022
Number of successful extensions: 797
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)