Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30365
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    27   2.8  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    26   4.8  
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi...    26   4.8  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   6.4  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   6.4  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    25   8.4  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   8.4  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -2

Query: 559 IRAEQEALCNTPDP---RDLIAPPSYDEALSMPKLNV 458
           + AEQE L  T D    R    P SYD  + M K+N+
Sbjct: 8   VAAEQETLFTTADKKLMRSTKFPASYDTKVDMKKVNI 44


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -2

Query: 217 RRRMSEYIVENDDSVIVEVQAQLERPLRPRNRRY 116
           + R+S+Y V  DD   V ++A++ + +  RN+++
Sbjct: 13  KNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKF 46


>SPAP27G11.02 |||TPR repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 505 APPSYDEALSMPKLNVSCHSL 443
           A P Y EAL++   N SCH L
Sbjct: 213 AVPLYHEALNLTMANPSCHGL 233


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -3

Query: 618 YKQNGKGKWKK 586
           YKQN  GKWKK
Sbjct: 197 YKQNSHGKWKK 207


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -1

Query: 665 ISERNPK---FDETSSCRHTSRTGKAS 594
           +S +NP+   F +T   +H SR+GKA+
Sbjct: 478 LSSKNPRKVHFSDTLEIKHVSRSGKAN 504


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -3

Query: 612 QNGKGKWKKRETD*GK*EYVRNRKRYVIHQIHVI*SRHRRTMKLSRCQN 466
           ++ KGK +KR+TD  K    ++RK+   H IH+   + R   K+   Q+
Sbjct: 257 EDNKGKIRKRKTDDAK----KSRKKRAPH-IHIEYEQERENEKIPAVQH 300


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +2

Query: 524 WCIT*----RFLFRTYSHLPQSVSRFFHL 598
           WCI      RF+ RTY  LP+  +R+ HL
Sbjct: 536 WCIDEAARRRFVKRTYIPLPEKETRYKHL 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,242
Number of Sequences: 5004
Number of extensions: 45921
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)