Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30365
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0565 - 19561078-19561425,19562253-19563746                       33   0.23 
03_02_0018 - 5016752-5017288                                           28   8.8  

>07_03_0565 - 19561078-19561425,19562253-19563746
          Length = 613

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +1

Query: 121 VDF*GEGVVLTALE--LPQ*HYHRFQQYIQTFADAEHLVIDPTQLFRDCHTFYFF---YD 285
           VDF  E  V+  L    P   Y  +++  +  AD      D  ++ R  H+F FF    D
Sbjct: 175 VDFHFESSVVPLLSRAAPSDTYRIWKRGAELRADTTLAGFDGLRIRRADHSFLFFGEEAD 234

Query: 286 ASAVYLPLGSRLVLNHHKRVHHRSY 360
           A   +LP GS LVL+  KR  H ++
Sbjct: 235 AGGRHLPPGSLLVLHRGKREVHDAF 259


>03_02_0018 - 5016752-5017288
          Length = 178

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 516 RGSGVLHNASCSARILICLNLSLASSTCLSR 608
           RG G + +A   AR+ + L+LSL S  C  R
Sbjct: 120 RGGGAIAHAHARARLSLSLSLSLFSIDCYER 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,649,424
Number of Sequences: 37544
Number of extensions: 307127
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)