Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30365
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.73 
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)                  28   6.8  
SB_57078| Best HMM Match : Xlink (HMM E-Value=5.8)                     28   6.8  
SB_7443| Best HMM Match : Xlink (HMM E-Value=5.8)                      28   6.8  
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     28   9.0  
SB_18706| Best HMM Match : Transposase_11 (HMM E-Value=0.44)           28   9.0  

>SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = -3

Query: 285 VVEEIEGMAVTK*LSWINHQVLGVGECLNILLKTMIVLLWKFKRS*ND 142
           + EE EG+AV   L ++    LG+ +   IL+  +I +L+KFK+  N+
Sbjct: 290 ICEESEGVAVPSILMFLYFTPLGLLQLCLILVSRLIKVLFKFKQQFNE 337


>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
          Length = 1417

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = -1

Query: 698 CHDHRLVLVYIISERNPKFDETSSCRHTSRTGKASGRSERQIEANENTCGTGSVM*Y 528
           CH  R++     ++  P   E  SCRH  + GK+ G + R      N  G G+V  Y
Sbjct: 604 CHGERILEQECNTDPCP---EAHSCRHIQQLGKSKGVNYRDGVYKINPDGKGAVKTY 657


>SB_57078| Best HMM Match : Xlink (HMM E-Value=5.8)
          Length = 233

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 199 IQTFADAEHLVIDPTQLFRDCHTFYFFYDASA--VYLP-LGSRLVLNHHKRVHHRSYQ 363
           +QT+ADA H   +      +C   + F D S   +  P L  R+V N HKRVH   YQ
Sbjct: 156 LQTYADAIH---NKGAALDNC---FGFVDGSVRPITRPGLNQRVVYNGHKRVHALKYQ 207


>SB_7443| Best HMM Match : Xlink (HMM E-Value=5.8)
          Length = 233

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 199 IQTFADAEHLVIDPTQLFRDCHTFYFFYDASA--VYLP-LGSRLVLNHHKRVHHRSYQ 363
           +QT+ADA H   +      +C   + F D S   +  P L  R+V N HKRVH   YQ
Sbjct: 156 LQTYADAIH---NKGAALDNC---FGFVDGSVRPITRPGLNQRVVYNGHKRVHALKYQ 207


>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 265 YGSHEIAELDQSPGARRRRMSEYIVENDDSVIVEVQAQLERPLRP 131
           Y  H+  +L + P +RRR  S+Y  E+ D +  E +  ++  LRP
Sbjct: 296 YSKHK-KQLLRDPRSRRRCHSDYETEDSDFMESESELSIDSLLRP 339


>SB_18706| Best HMM Match : Transposase_11 (HMM E-Value=0.44)
          Length = 248

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/55 (34%), Positives = 24/55 (43%)
 Frame = +1

Query: 199 IQTFADAEHLVIDPTQLFRDCHTFYFFYDASAVYLPLGSRLVLNHHKRVHHRSYQ 363
           +QT+ADA H   +      +C  F            L  R+V N HKRVH   YQ
Sbjct: 44  LQTYADAIH---NKGAALDNCFGFVDGTVRPITRPGLNQRVVYNGHKRVHALKYQ 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,380,724
Number of Sequences: 59808
Number of extensions: 346420
Number of successful extensions: 914
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)