Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30365
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g23390.1 68414.m02928 kelch repeat-containing F-box family pr...    32   0.45 
At5g06220.1 68418.m00694 expressed protein                             28   5.6  
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote...    28   7.3  

>At1g23390.1 68414.m02928 kelch repeat-containing F-box family
           protein similar to hypothetical protein GB:AAF27090
           GI:6730669 from (Arabidopsis thaliana); contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 394

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = +1

Query: 457 IHLVLASRELHRTTVARSNHVDLVYYITLPVPHVFSFASICXXXXXXXXXXXXXWRQDDV 636
           I L  AS  +   +VARS+H  L+Y ++   P  FSF++               WR D +
Sbjct: 92  IELNTASSPVEHVSVARSSHSTLLYALS---PARFSFSTDAFHLTWQHVAPPRVWRIDPI 148

Query: 637 SSNFGFRSLII 669
            +  G RSLII
Sbjct: 149 VAVVG-RSLII 158


>At5g06220.1 68418.m00694 expressed protein
          Length = 813

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 241 LDQSPGARRRRMSEYIVENDDSVIVEVQAQLERPLRPRNRRYSIDDNDVRESDF*FFFIQ 62
           L+ S  A+   + E   ++D     E Q+Q  R   P+N   S+D    R+S F  FF++
Sbjct: 541 LEASFRAKAASLQEGGGDSDSQEYSEEQSQYLRGKDPKNSINSVDQGTSRDSGFWGFFVR 600


>At2g40040.1 68415.m04920 defective chloroplasts and leaves
           protein-related / DCL protein-related similar to DCL
           protein, chloroplast precursor (Defective chloroplasts
           and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
           esculentum]
          Length = 839

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 650 PKFDETSSCRHTSRTGKASGRSERQIEANENTCGTGSVM*YTRST 516
           PKF++++  ++    GK SG +  +  + +N C  GS    ++ST
Sbjct: 154 PKFEDSADFQNLHDEGKPSGANWEKSSSWDNGCSGGSEWGVSKST 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,362
Number of Sequences: 28952
Number of extensions: 244188
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)