Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30364
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    35   0.017
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592...    33   0.068
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37...    31   0.21 
07_03_0292 + 16318388-16318756                                         26   7.8  

>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
            282768-282923,283224-283349,283426-283560,283815-283942,
            284037-284148,284233-284547,284655-284771,284871-285166,
            285252-285783,287980-288082,288808-288881,288965-289062,
            289340-289380,289977-290032,290170-290244,290377-290469,
            290602-290850,290930-291002,291681-291766,291853-291938,
            292067-292142,292280-292347,292430-292496,292570-292665,
            292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 34.7 bits (76), Expect = 0.017
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 120  GRVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDL 227
            GR+++SP+AR+LAE  N+ L    GTG  G +   D+
Sbjct: 1758 GRIFSSPLARKLAEDNNVPLSSVMGTGPDGRILKADI 1794


>07_03_0044 -
           12758606-12758676,12758765-12758860,12759197-12759299,
           12759379-12759474,12759537-12759603,12759682-12759749,
           12759898-12759973,12760112-12760197,12760285-12760361,
           12761461-12761533,12761627-12761875,12761997-12762089,
           12762218-12762292,12762661-12762716,12763473-12763513,
           12763907-12764001,12764085-12764158,12765052-12765145,
           12765484-12765519
          Length = 541

 Score = 32.7 bits (71), Expect = 0.068
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 123 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDL 227
           R+++SP+AR+LAE  N+ L   +GTG  G +   D+
Sbjct: 256 RIFSSPLARKLAEDNNVPLSSVKGTGPDGRILKADI 291


>06_01_0037 -
           369498-369568,369668-369760,369889-369991,370061-370156,
           370227-370293,370379-370446,370606-370681,370890-370975,
           371065-371150,371337-371409,371490-371735,371845-371937,
           372045-372119,372496-372540,372631-372708,372805-372921,
           373865-373894
          Length = 500

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 123 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDL 227
           R ++SP+AR+LAE  N+ L   +GTG  G +   D+
Sbjct: 213 RTFSSPIARKLAEDNNVPLSSIKGTGPDGRILKADI 248


>07_03_0292 + 16318388-16318756
          Length = 122

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 147 RRLAEIKNIRLGGQGTGLYGSLKSGD 224
           RR A +   R GGQG+ LY  ++ GD
Sbjct: 72  RRRAAVCGERGGGQGSLLYAGVEEGD 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,404,947
Number of Sequences: 37544
Number of extensions: 55998
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)