Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30364
         (323 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase, p...    35   0.014
At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p...    34   0.025
At5g47480.1 68418.m05863 expressed protein                             26   6.7  

>At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           GI:5669871 [Zea mays]; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 123 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDL 227
           RV+ASP+AR+LAE  N+ L   +GTG  G +   D+
Sbjct: 246 RVFASPLARKLAEDNNVPLSDIEGTGPEGRIVKADI 281


>At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           [Zea mays] GI:5669871; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +3

Query: 123 RVYASPMARRLAEIKNIRLGG-QGTGLYGSLKSGDL 227
           R++ASP+AR+LAE  N+ L   +GTG  G +   D+
Sbjct: 246 RIFASPLARKLAEDNNVPLSSIKGTGPEGRIVKADV 281


>At5g47480.1 68418.m05863 expressed protein
          Length = 1350

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 135  SPMA-RRLAEIKNIRLGGQGTGLYGSL 212
            SP+A +R   + NIR  G GT L G L
Sbjct: 1274 SPIAMQRFPSVDNIRRSGSGTSLNGDL 1300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,112
Number of Sequences: 28952
Number of extensions: 38189
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)