Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30362
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    31   1.2  
U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related h...    29   3.7  
Z75541-5|CAE17852.1|  291|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +3

Query: 153 YYEETGKTIEKLFHTQLTSTCVQICGHTHTHTSAVFIKLLVFFHFSQLILINLS*GRLLY 332
           +Y     ++  L  ++ T +  QI  HTHTHT  VF+   V F  S  ++++L    ++Y
Sbjct: 26  FYSRRLSSLASLPFSKTTPSFFQIHRHTHTHTILVFV---VHFFISIHLVLSLLLKIVIY 82

Query: 333 S 335
           S
Sbjct: 83  S 83


>U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related
           helicase protein 2 protein.
          Length = 620

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = -1

Query: 425 VFIHLKYSLDHLNFG-N*R--ELGNSENWLSGRTVQ*TASA*IN*NQLREVKKNQQF 264
           +F+  K   D LN+  N R  ELG   +W+SG+     +SA I+ ++ ++++K + F
Sbjct: 288 IFVRTKKEADFLNYVLNDRLHELGIKSDWMSGQKKSTASSADISASKQKQMEKLKMF 344


>Z75541-5|CAE17852.1|  291|Caenorhabditis elegans Hypothetical
           protein F52B5.7 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 611 RQSLKHSVVCKENLPARDT 667
           R+ LK S +C+E +PA DT
Sbjct: 44  REQLKRSKICEEKVPAEDT 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,777,161
Number of Sequences: 27780
Number of extensions: 304410
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)