Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30362
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29800.1 68414.m03643 zinc finger (FYVE type) family protein ...    28   5.9  
At5g47910.1 68418.m05918 respiratory burst oxidase protein D (Rb...    28   7.9  
At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP c...    28   7.9  
At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP c...    28   7.9  

>At1g29800.1 68414.m03643 zinc finger (FYVE type) family protein
           contains Pfam domain PF01363: FYVE zinc finger
          Length = 433

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 467 RCSIKIYP*YLIRRVFIHLKYSLDHLNFGN*RELGNSE--NWL 345
           RC I     +L+ + +  + ++L   NFGN RE+  +E   WL
Sbjct: 64  RCGINFLSGHLLEQAWQDMAHTLTEANFGNAREILETEPPKWL 106


>At5g47910.1 68418.m05918 respiratory burst oxidase protein D
           (RbohD) / NADPH oxidase identical to respiratory burst
           oxidase protein D from Arabidopsis thaliana [gi:3242789]
          Length = 921

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 258 TQHLYVCVYGRKFVHRLKLVVCEIIFQ 178
           T HL++ VY    VH +KL + +I +Q
Sbjct: 560 THHLFIIVYALLIVHGIKLYLTKIWYQ 586


>At3g07270.2 68416.m00865 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 330 YSPTGQPVFGITKFSSVAEV 389
           Y P+GQ V G++KFS V +V
Sbjct: 131 YVPSGQRVLGLSKFSRVTDV 150


>At3g07270.1 68416.m00866 GTP cyclohydrolase I identical to GTP
           cyclohydrolase I GI:19909132 from [Arabidopsis
           thaliana]; contains Pfam profile: PF01227 GTP
           cyclohydrolase I
          Length = 466

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 330 YSPTGQPVFGITKFSSVAEV 389
           Y P+GQ V G++KFS V +V
Sbjct: 131 YVPSGQRVLGLSKFSRVTDV 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,316
Number of Sequences: 28952
Number of extensions: 256676
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)