BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30360 (705 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 28 1.5 SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 2.6 SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 26 4.6 SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.6 >SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 466 Score = 27.9 bits (59), Expect = 1.5 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -3 Query: 442 SLNPHRTEFGQLSIGCWSLR 383 SL HR E+ ++S GCW +R Sbjct: 175 SLELHRGEWNKVSSGCWEIR 194 >SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 4196 Score = 27.1 bits (57), Expect = 2.6 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -2 Query: 191 CTILIDRVKFLILKLIYWIKVEAFQMDKPTGML 93 CT+L+ ++K LK ++WI + F++ K T L Sbjct: 1392 CTLLLQKLKSCPLKPVHWISL--FEITKSTEQL 1422 >SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 633 Score = 26.2 bits (55), Expect = 4.6 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -2 Query: 290 PPSKPSVASKTLNEADDVIPTKSTRIEYLLTTRCTILIDRVKFLI 156 PP P+V+S + A V TK T++ T LI K +I Sbjct: 588 PPHAPAVSSTPVTSAPPVSQTKVTKVSVPKKTSKKFLIKHNKCII 632 >SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1224 Score = 26.2 bits (55), Expect = 4.6 Identities = 20/65 (30%), Positives = 27/65 (41%) Frame = +3 Query: 327 PRRK*EWPPEQTVDFHSVTRSDQHPMLNCPNSVRCGFNDPGSLGKSARQNVISSQFRM*R 506 PR P T H +T +D HP+ S G+ND LG+ + S + R Sbjct: 827 PRTTSYTSPYATTSSH-ITPADVHPLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPV-R 884 Query: 507 SLTPG 521 S PG Sbjct: 885 SPFPG 889 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,909,381 Number of Sequences: 5004 Number of extensions: 61778 Number of successful extensions: 150 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 150 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 327172622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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