Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30360
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    28   1.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.6  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   4.6  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   4.6  

>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 442 SLNPHRTEFGQLSIGCWSLR 383
           SL  HR E+ ++S GCW +R
Sbjct: 175 SLELHRGEWNKVSSGCWEIR 194


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 191  CTILIDRVKFLILKLIYWIKVEAFQMDKPTGML 93
            CT+L+ ++K   LK ++WI +  F++ K T  L
Sbjct: 1392 CTLLLQKLKSCPLKPVHWISL--FEITKSTEQL 1422


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 290 PPSKPSVASKTLNEADDVIPTKSTRIEYLLTTRCTILIDRVKFLI 156
           PP  P+V+S  +  A  V  TK T++     T    LI   K +I
Sbjct: 588 PPHAPAVSSTPVTSAPPVSQTKVTKVSVPKKTSKKFLIKHNKCII 632


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +3

Query: 327  PRRK*EWPPEQTVDFHSVTRSDQHPMLNCPNSVRCGFNDPGSLGKSARQNVISSQFRM*R 506
            PR      P  T   H +T +D HP+     S   G+ND   LG+   +    S   + R
Sbjct: 827  PRTTSYTSPYATTSSH-ITPADVHPLPPPSTSTTAGWNDAPMLGQLPMRRAAPSMAPV-R 884

Query: 507  SLTPG 521
            S  PG
Sbjct: 885  SPFPG 889


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,381
Number of Sequences: 5004
Number of extensions: 61778
Number of successful extensions: 150
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)