Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30360
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0717 + 19706160-19706327,19707036-19707157,19707408-197075...    30   1.6  
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    30   2.1  
08_01_0126 - 1008469-1008477,1009055-1009396,1009499-1010167,101...    28   6.3  
03_05_0424 + 24107009-24107138,24107381-24107784                       28   6.3  
01_06_1229 + 35551522-35552169                                         28   6.3  
11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809           28   8.3  
04_04_0920 + 29429114-29430934                                         28   8.3  
03_01_0202 + 1605703-1606402,1606681-1606824,1606911-1607063,160...    28   8.3  
02_05_0100 - 25821606-25822349                                         28   8.3  

>09_04_0717 +
           19706160-19706327,19707036-19707157,19707408-19707510,
           19707644-19707734,19707960-19708132,19708534-19708622,
           19708995-19709085,19709272-19709361,19709807-19709854,
           19710033-19710104,19710181-19710274,19710350-19710494,
           19710809-19710951,19711601-19711751,19712276-19712449,
           19712799-19712874
          Length = 609

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
 Frame = -3

Query: 358 CSGGHSHFLRGECTGGGGHPIATLPRS------PPSHQRHSMK 248
           CSGGHS    GE  G GGHP AT P S      P  H+R S++
Sbjct: 551 CSGGHSTGSNGE--GFGGHP-ATSPSSSSWVSLPREHRRVSVQ 590


>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 RVAIGWPPPPVHSPRRK*EWPPEQ 359
           R+   WPPPP   PRR+ E  PE+
Sbjct: 716 RIPRPWPPPPPPPPRRRAEPTPER 739


>08_01_0126 -
           1008469-1008477,1009055-1009396,1009499-1010167,
           1010264-1010446,1010491-1010550,1010551-1010649
          Length = 453

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 340 HFLRGECTGGGGHPIATLPRSPPSHQRHSMKPTM*FRRSLQE 215
           H LRG+ TG GG  +A +P +  +H    +   M   R  +E
Sbjct: 196 HLLRGDSTGAGG-AVAAVPAAAVAHAERRLHQLMSADRDQEE 236


>03_05_0424 + 24107009-24107138,24107381-24107784
          Length = 177

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +3

Query: 273 GGLRGRVAIGWPPPPVHSPRRK*EWPPEQT 362
           G L G  A GWP  P     R+   PPE T
Sbjct: 108 GELEGDPAEGWPTSPTQCRHRRPSRPPETT 137


>01_06_1229 + 35551522-35552169
          Length = 215

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 441 DPGSLGKSARQNVISSQFRM*RSLTPG 521
           DP S+    R++ IS +FR+ RSL PG
Sbjct: 43  DPQSVAARERRHRISDRFRVLRSLVPG 69


>11_01_0690 - 5690427-5690529,5693619-5693792,5694511-5694809
          Length = 191

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -3

Query: 358 CSGGHSHFLRGECTGGGGHPIATLPRS 278
           C GGHS    GE  G GGHP  + P S
Sbjct: 124 CYGGHSTGSNGE--GFGGHPATSPPSS 148


>04_04_0920 + 29429114-29430934
          Length = 606

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 303 WPP-PPVHSPRRK*EWPPEQTVDFHSVTRSDQHPMLNCPNSVRCGFNDPGSL 455
           WPP PP+H PRR     P QT    ++ R     +L+C  S      +P +L
Sbjct: 8   WPPLPPLHPPRR----TPSQT-SLWTIRRQLASFVLHCSRSCASPLLEPKNL 54


>03_01_0202 +
           1605703-1606402,1606681-1606824,1606911-1607063,
           1607236-1607351,1607737-1607904,1607990-1608214,
           1608711-1608833
          Length = 542

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 449 ISREKRTSECDFLAVSYVEVIDSRITKDYIASVREMFTGI 568
           ISR K+ S  + L    + VI  R++++ IA +REMF  +
Sbjct: 353 ISRLKQFSAMNKLKKLALRVIAERLSEEEIAGLREMFKAV 392


>02_05_0100 - 25821606-25822349
          Length = 247

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 222 RLRRNYIVGFIECL*CDGGLRGRVAIGWPPPPVHSP---RRK*EWPPEQTVDFH 374
           RL   Y+V   E L  D  L+GR     PPPP H+P    ++ +WPP +   +H
Sbjct: 67  RLAAEYLVNIGE-LPPDALLQGR----HPPPPPHAPFQGYQQRQWPPPRGHPWH 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,955,691
Number of Sequences: 37544
Number of extensions: 438217
Number of successful extensions: 1360
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)