Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30360
(705 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27347| Best HMM Match : TPR_1 (HMM E-Value=0) 30 1.6
SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6) 30 2.1
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24) 29 3.7
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_30997| Best HMM Match : DUF1172 (HMM E-Value=0.38) 28 8.5
SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0) 28 8.5
SB_51634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0) 28 8.5
>SB_27347| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 280
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 631 QSRAVLRKRKKTYHCLTNIHYNSGKH 554
Q V+ + KTYH + N+H+N GK+
Sbjct: 252 QKTGVVFGQAKTYHDMGNVHFNQGKY 277
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 613 RKRKKTYHCLTNIHYNSGKH 554
R + K YH + N+H+N GK+
Sbjct: 98 RGQAKAYHGMGNVHFNQGKY 117
>SB_54465| Best HMM Match : PufQ (HMM E-Value=1.6)
Length = 379
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 105 NRHVDEIKNAITSLTQILWRVHC 37
N V EI N ITS+ WRVHC
Sbjct: 79 NGEVCEITNEITSIVGKTWRVHC 101
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 303 WPPPPVHSPRRK*EWPPEQTVDFHSVTRSDQHPMLNCP 416
W PP + +P K EW P+Q +D + HP ++ P
Sbjct: 944 WEPPMIDNPEYKGEWKPKQ-IDNPNYKGEWVHPEIDNP 980
>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
Length = 208
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -1
Query: 138 DKSRSVSNGQTNRHVDEIKNAITSLTQILWRVHCTI 31
DKS + NG+T + + ++ + + QI W C +
Sbjct: 80 DKSVKLWNGETGKFITSLRGHVNCVYQIAWSADCRL 115
>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 288 RVAIGWPPPPVHSPRRK*EWPPEQT 362
R A+ WPP ++ RR WPP Q+
Sbjct: 76 RRALPWPPTQSYTIRRALPWPPRQS 100
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 288 RVAIGWPPPPVHSPRRK*EWPPEQTVDFHSVTRSDQHPML 407
R A+ WPP ++ RR WP ++ + + + R Q ++
Sbjct: 90 RRALPWPPRQSYTIRRALPWPRDKVIQYDARYRGHQDKVI 129
>SB_30997| Best HMM Match : DUF1172 (HMM E-Value=0.38)
Length = 505
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/81 (25%), Positives = 30/81 (37%)
Frame = +1
Query: 313 RQCIHPAESENGPLSRLSTFIP*HVATNTLCLIAQTRCDAGSTTQDLSGKAHVRM*FPRS 492
R C+ S GP+ L IP + L G +Q GKA + +
Sbjct: 281 RSCVQAGHSAKGPIGLLKKLIPIVFSAEELARSCGQGLARGGASQKEDGKAPLDQ--HKV 338
Query: 493 FVCRGH*LPDYEGLHCISTGN 555
C+G L + G+ TGN
Sbjct: 339 NACKGPNLAQFNGV-IFRTGN 358
>SB_16367| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 635
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 613 RKRKKTYHCLTNIHYNSGKH 554
R + K YH + N+H+N GK+
Sbjct: 295 RGQAKAYHGMGNVHFNQGKY 314
>SB_51634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 288 RVAIGWPPPPVHSPRRK*EWPPEQT 362
R A+ WPP + RR WPP Q+
Sbjct: 102 RRALPWPPSQRFTMRRTLPWPPSQS 126
>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 817
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 105 NRHVDEIKNAITSLTQILWRVHC 37
++ +DE K T+LT++L R+HC
Sbjct: 181 SKELDEFKERNTNLTELLERLHC 203
>SB_20575| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 1106
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 613 RKRKKTYHCLTNIHYNSGKH 554
R + K YH + N+H+N GK+
Sbjct: 152 RGQAKAYHGMGNVHFNQGKY 171
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,894,468
Number of Sequences: 59808
Number of extensions: 484100
Number of successful extensions: 1072
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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