Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30360
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical p...    30   1.9  
U64603-1|AAB04581.2|  232|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a prot...    29   4.3  
Z49130-7|CAA88972.2|  316|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81454-7|CAB76407.1|  378|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    28   7.5  
X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    28   7.5  
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    28   7.5  
AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical
           protein K08F4.4 protein.
          Length = 532

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = -2

Query: 323 MHWRGWPPYCDPPSKPSVASKTLNEADDVIPTKSTRIEYLLTTRCTILIDRVKFLILKLI 144
           M W     +C P    S+  K + + D++  T      Y++T  C ++I     L L L+
Sbjct: 224 MRWISALMWCYPIGILSLVCKNIIDIDNLTETAQALAMYVVTVICGLMIH--SLLTLPLL 281

Query: 143 YWIKVEAFQMDKPTGML 93
           Y++  +       TGML
Sbjct: 282 YFLVTKKSPFAFMTGML 298


>U10401-10|AAA19062.2|  476|Caenorhabditis elegans Hypothetical
           protein T20B12.9 protein.
          Length = 476

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -2

Query: 233 PTKSTRIEYLLTTRCTILIDRVKFLILKLIYWIKVEAFQMDKP 105
           P +   I  +   RC++++  + FLI  ++YW  +   +MD+P
Sbjct: 434 PDRDWTITSVQVDRCSMIMFPLSFLIFNVVYW-SIYFMKMDRP 475


>U64603-1|AAB04581.2|  232|Caenorhabditis elegans Hypothetical
           protein C09B7.2 protein.
          Length = 232

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -2

Query: 284 SKPSVASKTLNEADDVIPTKSTRIE-YLLTTRCTILIDRVKFLI-LKLIY 141
           S P    KT+N A +    ++ R++ + LTT   I+ + VK ++ LK+IY
Sbjct: 163 SLPEFQKKTVNLAQNFFDIENVRLKFFFLTTNFGIIDNSVKAIVHLKIIY 212


>AC084159-12|ABO16466.1|  377|Caenorhabditis elegans F-box a protein
           protein 222 protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 342 EWPPEQTVDFHSVTRSDQHPMLNCPNS 422
           +WP  +TV F+ + +S+  PM+ C NS
Sbjct: 206 KWPNLKTVFFNGIHQSEIKPMITCFNS 232


>Z49130-7|CAA88972.2|  316|Caenorhabditis elegans Hypothetical
           protein T06D8.9 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 394 WSLRVTE*KSTVCSGGHSHFLRGECTGGGGHPIATLPRSPPSHQRHSMKPTM*FRRSLQ 218
           W+ R    +S+  + G S    G  +GGGG      P +PP +  +S  P   FR   Q
Sbjct: 169 WTNRNQNPESSGYTSGGSGGPGGPGSGGGGGGPGGYPSAPPPYDDYSKPPPYGFRGDSQ 227


>Z81454-7|CAB76407.1|  378|Caenorhabditis elegans Hypothetical
           protein B0391.11 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 342 EWPPEQTVDFHSVTRSDQHPMLNCPNS 422
           +WP  +TV F+ + +S+  PM+ C NS
Sbjct: 206 KWPNLKTVFFNGIHQSEIKPMIACFNS 232


>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 233 PTKSTRIEYL-LTTRCTILIDRVKFLILKLI 144
           PTK+  + +  + T+C I  D V+FL++K +
Sbjct: 294 PTKARSVSFKEIATKCQIPFDEVEFLVMKAL 324


>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 WPPPPVHSPRRK*EWPPEQ 359
           W PP + +P  K EW P+Q
Sbjct: 256 WEPPMIDNPEYKGEWKPKQ 274


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 303 WPPPPVHSPRRK*EWPPEQ 359
           W PP + +P  K EW P+Q
Sbjct: 256 WEPPMIDNPEYKGEWKPKQ 274


>AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical
           protein W10G11.17 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 316 GGGGHPIATLPRSPPSHQRHSMKPTM*FRRSLQELNIY 203
           GGGG+  +T    PP     + +PT     S+ E+ +Y
Sbjct: 160 GGGGNTTSTEDGLPPEEPTTTTEPTTTTTESISEVEVY 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,651
Number of Sequences: 27780
Number of extensions: 370086
Number of successful extensions: 942
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)