Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30360
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family...    32   0.32 
At4g12610.1 68417.m01987 transcription initiation factor IIF alp...    30   1.7  
At4g17780.1 68417.m02653 F-box family protein contains F-box dom...    29   2.3  
At3g12690.3 68416.m01586 protein kinase, putative similar to vir...    29   2.3  
At3g12690.2 68416.m01585 protein kinase, putative similar to vir...    29   2.3  
At3g12690.1 68416.m01584 protein kinase, putative similar to vir...    29   2.3  
At3g26240.1 68416.m03274 DC1 domain-containing protein contains ...    29   3.0  
At3g26250.1 68416.m03275 DC1 domain-containing protein contains ...    29   4.0  
At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondria...    28   6.9  
At1g02950.2 68414.m00263 glutathione S-transferase, putative sim...    27   9.2  
At1g02950.1 68414.m00262 glutathione S-transferase, putative sim...    27   9.2  

>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At3g25690,
           At5g61090 [Arabidopsis thaliana]
          Length = 681

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -3

Query: 355 SGGHSHFLRGECTGGGGHPIATLPRSPPSHQRHSMKPTM*FRRSLQELNIY 203
           SG    F +   T G   P    P +PP   R   K T   RRS Q  N+Y
Sbjct: 351 SGEFCQFSKTHSTNGDNAPSMPAPPAPPGSGRSLKKATSKLRRSAQIANLY 401


>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
           subunit (TFIIF-alpha) family protein low similarity to
           SP|Q05913 Transcription initiation factor IIF, alpha
           subunit (TFIIF-alpha) (Transcription factor 5, large
           chain) (TF5A) {Drosophila melanogaster}; contains Pfam
           profile PF05793: Transcription initiation factor IIF,
           alpha subunit (TFIIF-alpha)
          Length = 543

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 305 PPYCDPPSKPSVASKTLNEADDVIPTKSTR 216
           PP   PP+KPS   + LN+ D   P+ S +
Sbjct: 402 PPRGTPPAKPSKGKRKLNDGDSKKPSSSVQ 431


>At4g17780.1 68417.m02653 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 347

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 191 T*WLINIQFL*TSSELHRRLH*VSLMRRRASREGRNRVATPAS 319
           T W + I  + T  E   + + + L  R ASRE RNR  TP S
Sbjct: 271 TEWKLEIWSMDTEVETWTKTYSIDLENRVASRERRNRWFTPVS 313


>At3g12690.3 68416.m01586 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -3

Query: 409 LSIGCWSLRVTE*KSTVCSGGHSHFLRGECTGGGGHPIATLPRSPPSHQRHSMK 248
           LS+ C         S+VCSGG +         G  HP A LPR  PS +    K
Sbjct: 331 LSLRCTFNPTLVKSSSVCSGGGAILNEEFAVNGCMHPSAFLPRLLPSKKTRKAK 384


>At3g12690.2 68416.m01585 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -3

Query: 409 LSIGCWSLRVTE*KSTVCSGGHSHFLRGECTGGGGHPIATLPRSPPSHQRHSMK 248
           LS+ C         S+VCSGG +         G  HP A LPR  PS +    K
Sbjct: 331 LSLRCTFNPTLVKSSSVCSGGGAILNEEFAVNGCMHPSAFLPRLLPSKKTRKAK 384


>At3g12690.1 68416.m01584 protein kinase, putative similar to viroid
           symptom modulation protein [Lycopersicon esculentum]
           gi|7672777|gb|AAF66637
          Length = 577

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -3

Query: 409 LSIGCWSLRVTE*KSTVCSGGHSHFLRGECTGGGGHPIATLPRSPPSHQRHSMK 248
           LS+ C         S+VCSGG +         G  HP A LPR  PS +    K
Sbjct: 331 LSLRCTFNPTLVKSSSVCSGGGAILNEEFAVNGCMHPSAFLPRLLPSKKTRKAK 384


>At3g26240.1 68416.m03274 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 922

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 496 VCRGH*LPDYEGLHCISTGNVYRNYNEC 579
           VCR     DY G HCI  G +Y  +++C
Sbjct: 537 VCRRKINNDYGGYHCIKKGCLYAVHSKC 564


>At3g26250.1 68416.m03275 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 490

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 496 VCRGH*LPDYEGLHCISTGNVYRNYNEC 579
           VCR     DY G HCI  G  Y  +++C
Sbjct: 103 VCRRKINNDYGGYHCIKNGCFYAVHSKC 130


>At5g47030.1 68418.m05796 ATP synthase delta' chain, mitochondrial
           identical to SP|Q96252 ATP synthase delta' chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile PF02823: ATP synthase,
           Delta/Epsilon chain, beta-sandwich domain
          Length = 203

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 317 WRGWPPYCDPPSKPSVASKTLNEADDVIPTKST 219
           W+   P  DPP  PS   K        IPTK T
Sbjct: 42  WKKVAPNMDPPQTPSAFMKPRPSTPSSIPTKLT 74


>At1g02950.2 68414.m00263 glutathione S-transferase, putative
           similar to glutathione-S-transferase GI:169887 from
           [Silene vulgaris]
          Length = 245

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 215 IEYLLTTRCTILID-RVKFLILKLIYWIKVEAFQMDKPTGMLT 90
           I Y+ ++R T L++ R    +  L  W+++EA Q D P   LT
Sbjct: 98  IAYVHSSRGTQLLNLRSHETMATLTMWMEIEAHQFDPPASKLT 140


>At1g02950.1 68414.m00262 glutathione S-transferase, putative
           similar to glutathione-S-transferase GI:169887 from
           [Silene vulgaris]
          Length = 243

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 215 IEYLLTTRCTILID-RVKFLILKLIYWIKVEAFQMDKPTGMLT 90
           I Y+ ++R T L++ R    +  L  W+++EA Q D P   LT
Sbjct: 96  IAYVHSSRGTQLLNLRSHETMATLTMWMEIEAHQFDPPASKLT 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,209,634
Number of Sequences: 28952
Number of extensions: 335865
Number of successful extensions: 1230
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)