Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30357
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    80   9e-16
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    27   9.1  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    27   9.1  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    27   9.1  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    27   9.1  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 80.2 bits (189), Expect = 9e-16
 Identities = 48/116 (41%), Positives = 62/116 (53%)
 Frame = +2

Query: 47  MASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXA 226
           MASQTQGIQQLLAAEKRAAEK++                   EV                
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQ 60

Query: 227 KHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 394
           +++GT+E + +KI  +T+ +I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 61  QYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 165 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 275
           + +K  S   S K  SS+ LKP T++P     P SMP+
Sbjct: 3   INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 438 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 316
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 438 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 316
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 438 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 316
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 438 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 316
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 97  IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 137


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 540 VGSKKTCRLHTLVTMICQINIQFIFLNKSDQIKLVRRKL 424
           + S +TC L T   +I  +    IFL  SD +K ++ KL
Sbjct: 389 LSSLETCFLKTTKPVISTLFYTIIFLQYSDTVKTLQTKL 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,172,250
Number of Sequences: 27780
Number of extensions: 197903
Number of successful extensions: 572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)