Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30357
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04390.1 68417.m00627 Ulp1 protease family protein contains P...    29   2.8  
At2g34710.1 68415.m04263 homeobox-leucine zipper transcription f...    28   4.9  
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    28   4.9  
At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG...    27   6.4  
At3g49330.1 68416.m05393 invertase/pectin methylesterase inhibit...    27   6.4  
At1g44810.1 68414.m05133 expressed protein  contains Pfam profil...    27   8.5  

>At4g04390.1 68417.m00627 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 963

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 33  CVFSIWRVRPKESNSF*LLKNALRRKSARQGSEKRNA 143
           CV S   V PK+     +LK    RKSA+QG  K+N+
Sbjct: 340 CVPSEVVVAPKKRKKSAMLKGGRGRKSAKQGRFKKNS 376


>At2g34710.1 68415.m04263 homeobox-leucine zipper transcription
           factor (HB-14) identical to homeodomain transcription
           factor (ATHB-14)GP:3132474 GB:Y11122 [Arabidopsis
           thaliana];
          Length = 852

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 254 AAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYD---IKPELH 379
           AA++    + K+  MNK++  + + + K V NLVY+   +K +LH
Sbjct: 87  AARLQTVNR-KLNAMNKLLMEENDRLQKQVSNLVYENGHMKHQLH 130


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1116

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 96  ALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMPR 275
           AL  K +    ++RN       RLK  LK    + K    +   STW    +L+  SMP 
Sbjct: 719 ALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGSMPS 778

Query: 276 P 278
           P
Sbjct: 779 P 779


>At4g23710.1 68417.m03412 vacuolar ATP synthase subunit G 2 (VATG2)
           / V-ATPase G subunit 2 (VAG2) / vacuolar proton pump G
           subunit 2 identical to Swiss-Prot:O82629 vacuolar ATP
           synthase subunit G 2 (V-ATPase G subunit 2, Vacuolar
           proton pump G subunit 2) [Arabidopsis thaliana]
          Length = 106

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
 Frame = +2

Query: 56  QTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXXAKHM 235
           ++ GIQQLLAAE+ A + V+                   EV                   
Sbjct: 2   ESAGIQQLLAAEREAQQIVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATS 61

Query: 236 GTREGVAAKIDAETKVKIEEM-NKMVQTQKEAV 331
           G       +++ ET  KIE++ N+  +  K+ V
Sbjct: 62  GDSGANVKRLEQETDAKIEQLKNEATRISKDVV 94


>At3g49330.1 68416.m05393 invertase/pectin methylesterase inhibitor
           family protein contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 186

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 507 LVTMICQINIQFIFLNKSDQIKLVRRKLCIK 415
           L+  IC+  I F F N++   +LVRR+  IK
Sbjct: 31  LINRICKQTIDFKFCNQTITSQLVRRQTSIK 61


>At1g44810.1 68414.m05133 expressed protein  contains Pfam profile:
           PF04504 protein of unknown function, DUF573
          Length = 296

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/36 (27%), Positives = 24/36 (66%)
 Frame = +2

Query: 257 AKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDI 364
           +K+  ETK +IEE  KMV+ ++  ++   ++++ ++
Sbjct: 253 SKVSKETKKRIEEKMKMVEAKELELLSQKIDVLKEV 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,498,138
Number of Sequences: 28952
Number of extensions: 184465
Number of successful extensions: 528
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)