Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30356
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 31 0.17
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 27 2.1
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 2.8
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 27 2.8
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 2.8
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 26 5.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.7
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 8.7
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 8.7
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.17
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 693 LGIPL*LHTLPNTCLFSKQTVSSGQEVSDVLQHLNKTD 580
LG+P PN C+FS V G +D+L H ++ +
Sbjct: 411 LGLPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREE 448
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 2.1
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Frame = +3
Query: 447 YSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS----------YLN 596
+ VVI+ + Y +V+VDG I + C++ V+ ++ S +N
Sbjct: 70 HPRVVIHTASPVHNLARDIYFEVNVDGTANIIKACQKFNVDALVYTSSAGVVFNGADLIN 129
Query: 597 AEEHPKPLVLKKPSAWKISKYLGECAVRE---EYPTATIIRASDIYGSEDRFL 746
+E +P+ A+ SK L E V E E +R + ++G DR L
Sbjct: 130 VDE-SQPIPEVHMDAYNESKALAEKQVLEASSESLKTAALRVAGLFGPGDRQL 181
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 390 PGLNLRTLSTFGHHRNRLCMVKLTGY 313
P ++L + FG N +CM +L GY
Sbjct: 234 PSISLENVLAFGDGANDVCMFELAGY 259
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 420 EESIAKAVRYSNVVINLVGRDYETKNFKYND 512
+ESI+ + SN+ ++L R Y+TK K+N+
Sbjct: 166 KESISSSTN-SNIKLHLAARKYQTKPEKFNE 195
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 606 HPKPLVLKKPSAWKISKYLGECAVREEY 689
H P L +PSA ++ KYL E A + Y
Sbjct: 4 HDPPAPLSQPSASRLQKYLLESAEKHAY 31
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 26.2 bits (55), Expect = 5.0
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 408 HLLDEESIAKAVRYSNVVINLVGRDYETKNFKYNDVHVDGVRRIARICREEGVERFIHLS 587
H L S AK+ + + G D + N K +VH++ V +IA EG+ R
Sbjct: 58 HRLSSVSYAKSRTRLELTSSSHGSDTRSFNDKTKNVHLERVEKIASEWDPEGL-RVCFWD 116
Query: 588 YLNAEEHPKPLVLK--KPSAWKISKYL 662
+N ++ P L+L+ + W + L
Sbjct: 117 AVNCDD-PDGLLLRFLRARKWNVEAAL 142
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 252 TVFGCTGFVGRYVCNKLGKIGT 317
T CTG V + C+ L KIG+
Sbjct: 691 TSVNCTGIVLSFCCDNLAKIGS 712
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/37 (24%), Positives = 18/37 (48%)
Frame = +2
Query: 617 SCPEETVCLENKQVFGRVCSQRGIPNCHYYPSIRYLW 727
+CP TV + ++G + +R + Y ++Y W
Sbjct: 612 TCPNATVFFNSSVIWGVIGPKRMFSGKNTYTGLQYFW 648
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +3
Query: 51 YELSQYLSHKMAAIALKTQATSKLLHLNGSMSVVYIKA 164
YE+S+Y H A + S L LN ++++ A
Sbjct: 324 YEMSRYEKHLSAYEKANVKVASSLAFLNSGQAIIFSTA 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,136
Number of Sequences: 5004
Number of extensions: 62791
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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