Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30356
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    26   0.43 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   1.00 
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   1.00 
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   1.00 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   7.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 411 LLDEESIAKAVRYSNVVINLVGRDYETKNFKY-NDVHVDGVRRIARICREEGVERFI 578
           L+ +  +AK   Y N+V+ L+ +        + +D  V GV R  + C   G   +I
Sbjct: 317 LVKDSGVAKDAAYDNIVLKLLTKPRARGCIIFGSDQEVAGVMRAVKRCNATGAFSWI 373



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 256 FSVAPDLSDAMCATNWEKLVPS*FYHTEAI 345
           FS +P+LS+      + + +PS  Y  +A+
Sbjct: 242 FSTSPELSNKQRFEYFTRTIPSDHYQVKAM 271


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 483 YETKNFKYNDVHVDGVRRI 539
           + T +++ ND+H +GV+ I
Sbjct: 283 FRTSDYQQNDIHYEGVQNI 301


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 483 YETKNFKYNDVHVDGVRRI 539
           + T +++ ND+H +GV+ I
Sbjct: 283 FRTSDYQQNDIHYEGVQNI 301


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.6 bits (51), Expect = 1.00
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 483 YETKNFKYNDVHVDGVRRI 539
           + T +++ ND+H +GV+ I
Sbjct: 283 FRTSDYQQNDIHYEGVQNI 301


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = +1

Query: 661 WESVQSERNTQLPLLSEHQI 720
           WE ++ + + + P  S HQ+
Sbjct: 22  WEEIRRQASVEQPSFSVHQV 41


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 663 PNTCLFSKQTVSSGQE 616
           PNTC     +VS+G+E
Sbjct: 592 PNTCKVIASSVSAGEE 607


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 384 LNLRTLSTFGHHRNRLCMVKLTGYQFFPIC 295
           L +  +  FGHH NRL     T + F   C
Sbjct: 310 LGVGFMRIFGHHLNRLGREISTYFTFTRPC 339



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -2

Query: 744 KICLRNHRYLMLG**WQLGIPL*LHTLPNTCLFSKQTVS 628
           + CL  H   +      L  PL +H  P T +  K  +S
Sbjct: 603 RYCLFGHNVTLANKFESLSEPLRIHVSPTTYILLKYPIS 641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,928
Number of Sequences: 438
Number of extensions: 3950
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)