Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30355
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    64   2e-11
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    30   0.31 
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    30   0.41 
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.54 
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    27   2.2  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    27   2.9  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    27   3.8  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    27   3.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.7  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 35/84 (41%), Positives = 46/84 (54%)
 Frame = +2

Query: 497 KSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAM 676
           KSIR AF+RKVYAIL  QL VT  F  +F  H     WV  +P+   + F + +V L  +
Sbjct: 52  KSIRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGL 111

Query: 677 ACCPDVRRKAPTNFIFLAIFTAAQ 748
              P      P N+IFL +FTA +
Sbjct: 112 IMKP---YSYPRNYIFLFLFTALE 132


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 150 KN*TRRTNQITRACI-RIKADRTLRAGRTRKVDRTRKVDRTRKVDHTHRVEATRKVELTL 326
           KN T+    ++++ + R+K  +   AGR ++ +  R+  R RK +   ++EA   V+   
Sbjct: 23  KNETQEQPVLSKSALKRLKRQQEWDAGREKRAEMRREKKRLRKEERKRKIEAGEVVKSQK 82

Query: 327 QEERIPRV 350
           +  R+ +V
Sbjct: 83  KRIRLGKV 90


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 142 GF-GKTKLEGPTKLREHVSESRRTVPSGRGVPARWTVPARWTVPARWTIPTGWRLPARWS 318
           GF G++ L+        V+ SR ++PS       W V ++  +P+RW      R+   W 
Sbjct: 320 GFRGESDLDDEYIYESLVNYSRSSLPSAEN----WNVYSKKDIPSRWHYSNNERIAPVWM 375

Query: 319 LPSRRSVSPGWSI 357
           +P       GWS+
Sbjct: 376 IP-----DVGWSL 383



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 277 WTIPTGWRLPARWSLPSRRSVSPGWSIP 360
           W + +   +P+RW   +   ++P W IP
Sbjct: 350 WNVYSKKDIPSRWHYSNNERIAPVWMIP 377


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 199 SRRTVPSGRGVPARWTVPARWTVPARWTIPTGWRLPARWSLPSRRSVSPGWSIPAGRICA 378
           S  T+ +    P   +VP   ++ +  TIPT   +P   S P+  S+    +IP+    +
Sbjct: 87  SNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSIS 146

Query: 379 PSAWLPTCI 405
            S    T I
Sbjct: 147 ASTITTTII 155



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/75 (22%), Positives = 28/75 (37%)
 Frame = +1

Query: 148 GKTKLEGPTKLREHVSESRRTVPSGRGVPARWTVPARWTVPARWTIPTGWRLPARWSLPS 327
           G   L   + L      +  + P    VP   ++ +  T+P    +PT    P   S+ S
Sbjct: 76  GSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135

Query: 328 RRSVSPGWSIPAGRI 372
             ++    SI A  I
Sbjct: 136 NSTIPSSSSISASTI 150


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 730 GQEYEVRRSFASHVGTARHRDETDYQHYEGHPEHEGILGHP 608
           GQ  E  +++ SH+   R +   + Q  + +  H G   HP
Sbjct: 155 GQGSEPAKAYMSHISNLRKKSRLNLQEIQKNSLHTGNTSHP 195


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 198 IKADRTLRAGRTRKVDRTRKVDRTRKVDHTHRVEATRKVELTLQEERIPRVEHTRR 365
           + A  +L AGRTR+ +   K+    + +H    +   ++E   +E  I   E   R
Sbjct: 1   MSATESLVAGRTRRANAGNKMRELLEKEHLRMTQQNAEIEKEDEEYNIEEEEEAER 56


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 619 KSLHVLGGLHSADSLSHR 672
           K+LH LGGLHS   LS R
Sbjct: 335 KNLHRLGGLHSDSPLSKR 352


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/52 (21%), Positives = 21/52 (40%)
 Frame = -3

Query: 643 GHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESPAYRFFSE 488
           G+P+   ++ +         E+  ET RH    H  +    + S +Y  F +
Sbjct: 122 GYPDDRALMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFED 173


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 394 EARLRGRISALRVCSTRGIRSSWRVSSTLRVASTLWVWSTLRV 266
           EA++R R++ + +   RG+     +   +++A  LWV   + V
Sbjct: 853 EAKIRSRVNLIALSLERGLGIIRSLGEAVQLAPALWVEDAIDV 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,347
Number of Sequences: 5004
Number of extensions: 65790
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)