Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30354
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         29   0.50 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    28   1.1  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    28   1.1  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    28   1.1  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    28   1.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   3.5  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   4.6  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    26   6.1  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    25   8.1  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   8.1  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    25   8.1  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   8.1  

>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 115

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 702 MSVSLRFFSMNSIASSFIASSKYSTQLPDLPFLKKLFSPLEGLLYVEVFFML 547
           M +S    S++     F+    + +Q    PFL+ LFS L  L+ ++VF +L
Sbjct: 21  MVISFAVLSIHYACECFLYPKLFDSQRSPSPFLRWLFSVLGVLMSMDVFCIL 72


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 470 DKVCNFLNKAYTAEQKAELARHLSFESM-KKTSTYSK 577
           DK   +LNK+Y    + E+ R L + S  +K   YSK
Sbjct: 60  DKAIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSK 96


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 35/174 (20%), Positives = 71/174 (40%), Gaps = 4/174 (2%)
 Frame = +2

Query: 116 QRATFESFETLPNLPSPRYVKSHL--PLSRLPPALLDTAKVFYIARDPRDVAVSLHFA-V 286
           +R  + + +++ N PS   + + L  P +  P    +   ++    +P  +  S H + +
Sbjct: 365 ERKAYAADDSIDNTPSKVPIVNSLSDPRTNRPFFYSNPDSMYRSISNPLHLVDSQHLSPL 424

Query: 287 KLFGYFSDEVTFKEFWDLFKRDLVLHTPIFSHVKE-AWEKRHNPNLFFLFYEDMQNNLPS 463
               +F++ +   +F  L   +  L    F  + + +  K ++ N+F    ED++  L S
Sbjct: 425 NRKTHFNNPIGQPQFTCLDDHEKTLRETSFRSLDDMSLRKSNSDNIFVKPGEDLEIPLLS 484

Query: 464 VIDKVCNFLNKAYTAEQKAELARHLSFESMKKTSTYSKPSKGENSFFRKGKSGS 625
                 N   K+   E+  E     S+ S  K  +  K SKG +    +   GS
Sbjct: 485 DYSDSENISEKSSDDEEAFEKQVTSSYSSPIKVKSQGKSSKGSSGLDVREHEGS 538


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 509 EQKAELARHLSFESMKKTSTYSKPSKGENSFFRKGKSGSWVEY 637
           E K E +R   + S+ + S + KP +  N F +K    +W EY
Sbjct: 38  EVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEY 80


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 95  LQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDPRDVAVSL 274
           +   R ++   F+   T   +P P YV+ H P S  P  +LD  ++      P  V    
Sbjct: 104 IDEARAKEDPNFQIHSTPSRMP-PHYVQPHPPFSVFPAPILDVREL----TKPGAVKRVF 158

Query: 275 HFAVKLFGY 301
           HF + +  Y
Sbjct: 159 HFELDVSNY 167


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 140 ETLPNLPSPRYVKSHLPLSRLPPALLDT 223
           ET+P+ P P    S LP+   PPA L+T
Sbjct: 197 ETVPSTPQPA---SSLPIPSSPPAALET 221


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = +2

Query: 320 FKEFWDLFKRDLVLHTPIFSHVKEAWE 400
           F+ FW ++ + LV+   +F+H+ + ++
Sbjct: 43  FRRFWTIWLKSLVIMVLLFTHIYDCYK 69


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +2

Query: 452 NLPSVIDKVCNFLNKAYTAEQKAELARHL--SFESMKKTSTYSKPSKGEN 595
           N PS  D V    +K+ + ++   L   L  S +SMKK S   KP K  N
Sbjct: 207 NAPSPDDIVLMAQSKSKSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTN 256


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 681 FSMNSIASSFIASSKYSTQLPDLPFLKKLFSPL 583
           + +NSIA     + KY+T  P   + ++L SP+
Sbjct: 480 YPVNSIAVMAKVADKYTTDKPSPTWYQRLLSPI 512


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 543 LRA*RKLRHTANPPKAKIVSLEKVNPVV 626
           LR   +LRH A   K   V +EK+N ++
Sbjct: 388 LRELEELRHLATSAKEDFVKVEKLNKII 415


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -2

Query: 702 MSVSLRFFSMNSIASSFIASSKYSTQLPDLPFLKKLFSPLEGLLYVEV--FFMLSKL 538
           ++V +   ++ SI +  +   KY+T L  + F  K ++ L G +Y+E   F+ ++K+
Sbjct: 329 VNVEVPLRNIPSIETQKVFWPKYNTFLRFMEFKGKFYTRLSGAVYLEESDFYYIAKV 385


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 71  KSDAAKKMLQSIRPEQRATFESFETLP 151
           K+DA ++MLQSIR  + +  E+ + LP
Sbjct: 3   KTDACERMLQSIRSHKNSKLEN-QRLP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,054
Number of Sequences: 5004
Number of extensions: 58615
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)