Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30354
(712 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 3e-22
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0) 99 2e-21
SB_39059| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 2e-11
SB_27699| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.51) 44 2e-04
SB_43518| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_17639| Best HMM Match : Paf1 (HMM E-Value=0) 32 0.40
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 30 2.1
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 30 2.1
SB_12928| Best HMM Match : Sulfotransfer_1 (HMM E-Value=9.3e-10) 29 2.8
SB_15194| Best HMM Match : Ank (HMM E-Value=0.2) 29 4.9
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94) 28 6.5
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 102 bits (244), Expect = 3e-22
Identities = 59/171 (34%), Positives = 91/171 (53%), Gaps = 6/171 (3%)
Frame = +2
Query: 152 NLPSPRYVKSHLPLSRLPPALLDTAKVFYI--ARDPRDVAVSLHFAVKLFGYFSDEVTFK 325
++P+PR K+HL P TAK YI R+P+D AVS+ F K +F ++
Sbjct: 2471 SVPAPRVFKTHLHHHLAPMGSDTTAKPKYINVMRNPKDCAVSMFFHCKGMEFFKCNASWS 2530
Query: 326 EFWDLFKRDLVLHTPIFSHVKEAWEKRHNPNLFFLFYEDMQNNLPSVIDKVCNFLNKAYT 505
EF++ F R V F HV W+ +PN+ FL YEDM+ +LPS + ++ +F+ ++ +
Sbjct: 2531 EFFEAFIRGGVEEGLWFDHVLGWWKHHGDPNILFLKYEDMKKDLPSTVRQIASFVGRSPS 2590
Query: 506 AEQKAELARHLSFESMKKTSTY---SKPS-KGENSFFRKGKSGSWVEYFDD 646
E A + R +F++MK + +P K F RKG+ G W YF D
Sbjct: 2591 EEVIARIVRQTTFDAMKDGEQFFQRKRPDFKPGFKFIRKGEVGDWRNYFTD 2641
>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
Length = 922
Score = 99 bits (238), Expect = 2e-21
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 4/167 (2%)
Frame = +2
Query: 152 NLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDPRDVAVSLHFAVKLFGYFSDEVTFKEF 331
+LPSPR +K+HL +P + TAK Y R+P+DVAVS ++ + + + + +F
Sbjct: 98 SLPSPRILKTHLQYHLVPRSDGCTAKYIYNIRNPKDVAVSFYYHHRTLKPYCFQEKWNDF 157
Query: 332 WDLFKRDLVLHTPIFSHVKEAWEKRHNPNLFFLFYEDMQNNLPSVIDKVCNFLNKAYTAE 511
+++ V + F HV + WE R +PN+ L YEDM+ + + + FL +A T E
Sbjct: 158 FEMMMSGQVQYGSWFDHVLDWWEHRDDPNILLLKYEDMKKDHRGAVAAIAKFLGRALTEE 217
Query: 512 QKAELARHLSFESMKKTSTY--SKPSKGEN--SFFRKGKSGSWVEYF 640
Q + SFE MK + +P K N RKG G W +F
Sbjct: 218 QLDRIVSQTSFEFMKSQELFKVKEPFKNPNEPELIRKGVVGDWRNHF 264
Score = 73.3 bits (172), Expect = 2e-13
Identities = 36/99 (36%), Positives = 58/99 (58%)
Frame = +2
Query: 152 NLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDPRDVAVSLHFAVKLFGYFSDEVTFKEF 331
+LPSPR +K+HL +P + TAK Y R+P+DVAVS ++ + F + + + +F
Sbjct: 472 SLPSPRILKTHLQYHLVPRSGGCTAKYIYNIRNPKDVAVSYYYHHRTFKEYCFQEKWNDF 531
Query: 332 WDLFKRDLVLHTPIFSHVKEAWEKRHNPNLFFLFYEDMQ 448
+++ V + F HV + WE R +PN+ L YEDM+
Sbjct: 532 FEMMMSGQVQYGSWFDHVLDWWEHRDDPNILLLKYEDMK 570
>SB_39059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 66.9 bits (156), Expect = 2e-11
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +2
Query: 374 FSHVKEAWEKRHNPNLFFLFYEDMQNNLPSVIDKVCNFLNKAYTAEQKAELARHLSFESM 553
F HV W+ +PN+ FL YEDM+ +LP + ++ +F+ ++ + E A + R +F++M
Sbjct: 62 FDHVLGWWKHHEDPNILFLKYEDMKKDLPRTVRQIASFVGRSPSEEVIARIVRQTTFDAM 121
Query: 554 KKTSTY---SKPS-KGENSFFRKGKSGSWVEYFDD 646
K + +P K F RKG+ G W YF D
Sbjct: 122 KDGEQFYQRKRPDFKPGFKFIRKGEVGDWRNYFTD 156
>SB_27699| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0.51)
Length = 149
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/63 (33%), Positives = 38/63 (60%)
Frame = +2
Query: 152 NLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDPRDVAVSLHFAVKLFGYFSDEVTFKEF 331
+LPSPR +K+HL +P + TAK Y R+P+DVAVS ++ + + + + +F
Sbjct: 13 SLPSPRILKTHLQYHLVPRSDGCTAKYIYNIRNPKDVAVSFYYHHRTLKPYCFQEKWNDF 72
Query: 332 WDL 340
+++
Sbjct: 73 FEM 75
>SB_43518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +2
Query: 467 IDKVCNFLNKAYTAEQKAELARHLSFESMKKTSTYSKPS--KGENSFFRKGKSGSWVEYF 640
I ++ +F++K + + +A SF++MK +S K F RKGK G WV YF
Sbjct: 6 IKQIASFVDKNISPDLVQLVADQTSFDAMKDMPMFSLKGFYKETEKFMRKGKVGDWVSYF 65
Query: 641 DDXXXXXXXXXXXXNLSDTDMRF 709
+ +T + F
Sbjct: 66 SREQSERLDAIYNERIRETGLEF 88
>SB_17639| Best HMM Match : Paf1 (HMM E-Value=0)
Length = 335
Score = 32.3 bits (70), Expect = 0.40
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 660 SSFIASSKYSTQLPDLPFLKKLFS-PLEGLLYVE 562
S F+ KY+ LPD+PF K S P EG +V+
Sbjct: 2 SDFVTRIKYNNNLPDIPFDAKFISYPFEGNRFVQ 35
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 171 YLGDGRFGKVSKLSNVALCSGLIDCSIFFAASDFC 67
Y G G G++S ++ C+G+ DCS+ D C
Sbjct: 1536 YCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 171 YLGDGRFGKVSKLSNVALCSGLIDCSIFFAASDFC 67
Y G G G++S ++ C+G+ DCS+ D C
Sbjct: 13 YCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_12928| Best HMM Match : Sulfotransfer_1 (HMM E-Value=9.3e-10)
Length = 221
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +2
Query: 140 ETLPNLPSPRYVKSHLPLSRLPPA--LLDTAKVFYIARDPRDVAVSLHFAVKLFGYFSDE 313
+T LP PR +K+HL +P K + R+P+D VS +
Sbjct: 111 KTFQGLPRPRLLKTHLNYQYVPMGEDRGSAPKTIVVMRNPKDAFVSYFNHYTGLAILQCD 170
Query: 314 VTFKEFWDL 340
++EF++L
Sbjct: 171 TDWEEFFEL 179
>SB_15194| Best HMM Match : Ank (HMM E-Value=0.2)
Length = 167
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 104 IRPEQ-RATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTA 226
+ PE T S NLPSPRY + + S PP L+ A
Sbjct: 95 VHPEMFDVTVFSNSNFKNLPSPRYAEPLMKSSNSPPMQLERA 136
>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
Length = 1047
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 66 HRNLTLRKRCCNQSDLSRELRLRASKLCQIYRH 164
H + L C N ++++EL LRASKL H
Sbjct: 426 HLTVPLNMLCLNCQEVNQELSLRASKLADTMIH 458
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,844,161
Number of Sequences: 59808
Number of extensions: 405870
Number of successful extensions: 1102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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