Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30354
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132858-6|CAB60475.1| 412|Caenorhabditis elegans Hypothetical ... 56 2e-08
AF106579-9|AAC78202.1| 327|Caenorhabditis elegans Serpentine re... 31 1.1
Z77661-10|CAB01181.2| 340|Caenorhabditis elegans Hypothetical p... 29 4.3
AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical ... 28 5.7
U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine rec... 28 7.6
AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 28 7.6
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 28 7.6
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 28 7.6
AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 28 7.6
AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor med... 28 7.6
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 28 7.6
AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor med... 28 7.6
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 28 7.6
AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor med... 28 7.6
>AL132858-6|CAB60475.1| 412|Caenorhabditis elegans Hypothetical
protein Y113G7A.11 protein.
Length = 412
Score = 56.4 bits (130), Expect = 2e-08
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 8/171 (4%)
Frame = +2
Query: 152 NLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDPRDVAVSLHFAVKLFGYFS-DEVTFKE 328
N+ PR +K+H +P DT K Y R+P+D S + F ++ T+
Sbjct: 140 NIKGPRVLKTHFHHYNIPK-YPDT-KYIYCVRNPKDCLTSYFHHNRNFKIYNWANGTWDV 197
Query: 329 FWDLFKRDLVLHTPIFSHVKEAWEKRHNPNLFFLFYEDMQNNLPSVIDKVCNFL-----N 493
F DLF + F H+ + N+ FL YEDM +L + + K+ FL +
Sbjct: 198 FLDLFASGQLAFGDYFEHLLSWLPCLKDDNVLFLKYEDMFQDLENAVYKIGQFLGGEAAH 257
Query: 494 KAYTAEQKAELARHLSFESMKKTST--YSKPSKGENSFFRKGKSGSWVEYF 640
+ E E+ + + ++MKK + + + F RKG S W YF
Sbjct: 258 RVENPEILREIVDNSTIDAMKKDQKRWFPESQLHKVEFIRKGGSRDWKNYF 308
>AF106579-9|AAC78202.1| 327|Caenorhabditis elegans Serpentine
receptor, class t protein34 protein.
Length = 327
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/82 (29%), Positives = 42/82 (51%)
Frame = -2
Query: 711 GNRMSVSLRFFSMNSIASSFIASSKYSTQLPDLPFLKKLFSPLEGLLYVEVFFMLSKLKC 532
G+ +S+ L S+ ++ S S KY + P L ++ + L +LY+ VFF++ + K
Sbjct: 8 GSVLSIPLYNCSVKNLTSEQW-SEKYGERRPILGIVEATYGILINVLYIPVFFVIFEKKQ 66
Query: 531 LASSAFCSAV*ALLRKLQTLSI 466
+ S C + ALL + SI
Sbjct: 67 FSMS--CYKIMALLATVDFGSI 86
>Z77661-10|CAB01181.2| 340|Caenorhabditis elegans Hypothetical
protein F40G12.8 protein.
Length = 340
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = -2
Query: 711 GNRMSVSLRFFSMNSIASSFIASSKYSTQLPDLPFLKKLFSPLEGLLYVEVFFMLSKLKC 532
G+ +S+ L S ++ S S KY + P L ++ + L +LY+ VF ++ + K
Sbjct: 8 GSVLSIPLYNCSFKNLTSEQW-SEKYGERRPILGIVEATYGILINILYIPVFLVMFEKKQ 66
Query: 531 LASSAFCSAV*ALLRKLQTLSI 466
+ S C + ALL + SI
Sbjct: 67 FSMS--CYKIMALLASVDFGSI 86
>AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical
protein T27B7.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -1
Query: 337 VPEFFESDLVREIAEELNSEM*RHGHVSRVAGYVEYLCSIQQSWWQTR 194
V + F+ L ++ SE+ R ++ R+ +++ IQ+S W+TR
Sbjct: 351 VTDHFQQTLSNDLHHYYTSELNRERYLKRLTDFMKINKLIQKSIWETR 398
>U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 29 protein.
Length = 348
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 179 SHLPLSRLPPALLDTAKVFYIARDPRDVAVSLHFAVKLFGYFSDE 313
S++P+ PPA + FY D R + + F LF Y ++
Sbjct: 172 SYVPMCNYPPASSVSGTKFYFINDSRIIIMGTIFMCSLFLYIHNK 216
>AF357878-1|AAK27716.1| 589|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform I protein.
Length = 589
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 74 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 253
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 477 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 534
Query: 254 RD 259
+D
Sbjct: 535 KD 536
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 74 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 253
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 723 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 780
Query: 254 RD 259
+D
Sbjct: 781 KD 782
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 74 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 253
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 464 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 521
Query: 254 RD 259
+D
Sbjct: 522 KD 523
>AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform f protein.
Length = 555
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 74 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 253
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 443 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 500
Query: 254 RD 259
+D
Sbjct: 501 KD 502
>AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 74 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 253
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 464 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 521
Query: 254 RD 259
+D
Sbjct: 522 KD 523
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 74 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 253
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 674 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 731
Query: 254 RD 259
+D
Sbjct: 732 KD 733
>AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 74 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 253
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 501 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 558
Query: 254 RD 259
+D
Sbjct: 559 KD 560
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 74 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 253
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 723 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 780
Query: 254 RD 259
+D
Sbjct: 781 KD 782
>AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform c protein.
Length = 589
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 74 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 253
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 477 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 534
Query: 254 RD 259
+D
Sbjct: 535 KD 536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,430,475
Number of Sequences: 27780
Number of extensions: 318631
Number of successful extensions: 1043
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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