Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30353
         (734 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    53   8e-06
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    39   0.15 
UniRef50_Q5F958 Cluster: Putative type III restriction-modificat...    34   4.2  
UniRef50_UPI000023D82F Cluster: hypothetical protein FG05539.1; ...    33   7.3  
UniRef50_UPI0000F2B659 Cluster: PREDICTED: similar to chromosome...    33   9.6  
UniRef50_Q6FKR4 Cluster: Candida glabrata strain CBS138 chromoso...    33   9.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 52.8 bits (121), Expect = 8e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +1

Query: 196 FLLLRWVDELTAHLVLSGYWSP 261
           FLLLRWVDELTAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 38.7 bits (86), Expect = 0.15
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 384 AGWWYLSARTHKRSYHQ 434
           A WWYL ARTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q5F958 Cluster: Putative type III restriction-modification
           system methyltransferase; n=3; Proteobacteria|Rep:
           Putative type III restriction-modification system
           methyltransferase - Neisseria gonorrhoeae (strain ATCC
           700825 / FA 1090)
          Length = 687

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 347 QTKTHYCFTAEIGRVVVPIRADSQEVLPPVKNTYK---KTAYIQVPKNTGTVG 496
           + KTH       G   + IR D+ EVL  +KN Y    K  YI  P NTG+ G
Sbjct: 112 EDKTHNAKPENAGSQNLLIRGDNLEVLKHLKNAYANSVKMIYIDPPYNTGSDG 164


>UniRef50_UPI000023D82F Cluster: hypothetical protein FG05539.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG05539.1 - Gibberella zeae PH-1
          Length = 349

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 395 VPIRADSQEVLPPVKNTYKKTAYIQV--PKNTGTVGLPSNI*PARWKIFLSSFKPST 559
           VP    + E   PV++T + T   Q   P+ T T  LPS+   AR  +F +  KPST
Sbjct: 180 VPTSTAAPETAQPVQHTQQPTQTSQTLKPRGTNTSPLPSSHSTARAALFANRGKPST 236


>UniRef50_UPI0000F2B659 Cluster: PREDICTED: similar to chromosome 20
           open reading frame 174; n=1; Monodelphis domestica|Rep:
           PREDICTED: similar to chromosome 20 open reading frame
           174 - Monodelphis domestica
          Length = 1865

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 22/57 (38%), Positives = 26/57 (45%)
 Frame = +1

Query: 334 LPHPSNQNALLLHGRNRQGGGTYPRGLTRGPTTSKKHIQKNSIYTSSEKHWDRRSTE 504
           L HPS  +  LL G   Q    +     R PT SK    +    T SEKHWD R +E
Sbjct: 343 LEHPSRTSPGLLPGGVAQ---RWKMQEQRSPTASKHSQLQRQQATYSEKHWDSRVSE 396


>UniRef50_Q6FKR4 Cluster: Candida glabrata strain CBS138 chromosome
           L complete sequence; n=1; Candida glabrata|Rep: Candida
           glabrata strain CBS138 chromosome L complete sequence -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 660

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +1

Query: 400 YPRGLTRGPTTSKKHIQKNSIYTSSEKHWDRRSTEQYLTSSVEDLPFVF*AFHRFITINL 579
           +PR   R  TT  + I ++SIYTS   + +  +++QY  S++  L      F+ F+   +
Sbjct: 512 HPRIRPRQYTTDSERIDEHSIYTSELNNIESTASDQYPRSTLNVLDIQAKRFYDFLKQRM 571

Query: 580 LEM 588
            EM
Sbjct: 572 EEM 574


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 797,652,459
Number of Sequences: 1657284
Number of extensions: 17297887
Number of successful extensions: 37445
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37437
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)