Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30353
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   2.1  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.7  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.7  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   4.8  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    26   4.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   8.5  

>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 679 FVQYTNYPSGVPAPSTRKGREVQTND 602
           F Q++N PS   AP+T+  + V+T D
Sbjct: 568 FAQFSNLPSQSTAPATKPMKPVRTGD 593


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +2

Query: 341 TLQTKTHYCFTAEIGRVVVPIRADSQEVLPPVKNTY 448
           T+     +CF+  +G +  P+R  +Q++  P+++ Y
Sbjct: 241 TVSNLKRFCFSESLGHIFAPLRFQNQQL--PLQHVY 274


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 213 GGRAHSPPGVKWLLEPIDIYN 275
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 401 IRADSQEVLPPVKNTYKKTAYIQVPKNTGTVGLPSNI*PARWKIFLSSFKPSTGS 565
           IR D   V+  V  T +KT +     N G V +  N+  + +    S F P   +
Sbjct: 664 IRKDDHLVVSKVTKTTRKTGFGGFSANKGAVAIEMNVCDSDFCFVSSHFAPKVNN 718


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 148 GCLNPAYDIFKISSHFFLLLRWVDELTAHLVLSGYWS 258
           GCL+P   + +    FF  L + +  T + V SG+W+
Sbjct: 221 GCLHPLMKVREEFRKFFFELGFEEMPTNNFVESGFWN 257


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 383 LFLP*SNNAFWFEGWGSRCNYTKTLELISQGG*RIY 276
           LF P SN+  WF  W SR      L +ISQ    +Y
Sbjct: 769 LFAP-SNS--WFNSWHSRLELDSILAIISQFSLPVY 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,309,839
Number of Sequences: 5004
Number of extensions: 73155
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)