Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30353
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         29   5.1  
08_02_0625 + 19438768-19438889,19438897-19439065,19439131-194391...    28   8.8  
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948...    28   8.8  
01_03_0281 - 14570635-14574633                                         28   8.8  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 340 HPSNQNALLLHGRNRQGGGTYPRGLTRGPTTSK 438
           H ++    LL GR R GGG + RGL   P  S+
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSR 314


>08_02_0625 +
           19438768-19438889,19438897-19439065,19439131-19439174,
           19439431-19440061
          Length = 321

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 413 SQEVLPPVKNTYKKTAYIQVPKNTGTVGLPSNI*PARWKIFLSSFKPSTGSSL 571
           +++ L P  N Y   AYI++ K T    + S+I P+ +K        S G +L
Sbjct: 63  TEDFLTPSLNCYVTNAYIRIDKVTAVASIDSSIYPS-YKKSACKILTSAGGTL 114


>03_02_1010 -
           13194002-13194339,13194421-13194573,13194661-13194809,
           13194932-13195184,13195282-13195469,13195684-13195841,
           13196093-13196307,13196410-13196614
          Length = 552

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 545 KTKGRSSTELVKYCSVDRRSQCFSELVYMLF 453
           K KGR +  L   CS+  R  C+SE    +F
Sbjct: 366 KNKGRMARYLANKCSIASRIDCYSESATAVF 396


>01_03_0281 - 14570635-14574633
          Length = 1332

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +3

Query: 246 WLLEPIDIYNVNALPTLRYKF*GLSIVTTAAPPFKPKRIIASRQK*AGWW 395
           W L  ++I ++  L +L+Y   G+   T++  P   + I+   +   GWW
Sbjct: 793 WQLPSLEILHLEGLQSLQYLCSGVDNSTSSTFPKLRELILVDLKSLNGWW 842


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,771,015
Number of Sequences: 37544
Number of extensions: 494559
Number of successful extensions: 1093
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)