Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30353
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)                   29   3.0  
SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)                   29   5.2  
SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)               28   6.8  
SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_44733| Best HMM Match : Sof1 (HMM E-Value=3.4)                      28   9.0  

>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1675

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -1

Query: 542 TKGRSSTELVKYCSVDRRSQCFSELVYMLFFCMCFLLVVGPLVSPRG*VPPPC 384
           T+  S  +L  Y    RR    S  +Y   FC+   +VV  L+SP   +  PC
Sbjct: 108 TRSVSCVDLPIYAKWSRRRSITSNSLYEYLFCLVSAVVVASLLSPLRVLVLPC 160


>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
          Length = 1189

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = +2

Query: 386  RVVVPIRADSQEVLPPVKNT---YKKTAYIQVPKNTGTVGLPSNI 511
            +++VP+  + +E+L P   T   +K+T   ++P+NT    +PSNI
Sbjct: 1097 KLLVPVPVNYEEMLRPKFVTVPLFKRTGVRKIPENTPQRRIPSNI 1141


>SB_33053| Best HMM Match : DDE (HMM E-Value=2.1e-08)
          Length = 410

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 428 PPVKNTYKKTAYIQVPKNTG--TVGLPSNI*PARWKI 532
           P +KNTY     I +PKNT   T  L S I  A WKI
Sbjct: 123 PSLKNTYSNIKIIFLPKNTASKTQPLDSGI-IANWKI 158


>SB_36246| Best HMM Match : DDE (HMM E-Value=9.99967e-42)
          Length = 454

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 428 PPVKNTYKKTAYIQVPKNT--GTVGLPSNI*PARWKI 532
           P +KNTY     I +PKNT   T  L S I  A WKI
Sbjct: 348 PSLKNTYSNVKIIFLPKNTTSKTQPLDSGI-IANWKI 383


>SB_19291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 346 SNQNALLLHGRNRQGGGTYP--RGLTRGPTTSKKHIQKN 456
           S+ N+  L  +NR+G GTYP   G  +    +K H  +N
Sbjct: 724 SSDNSFSLEDKNREGPGTYPLRSGNAKPDVLAKLHRPQN 762


>SB_44733| Best HMM Match : Sof1 (HMM E-Value=3.4)
          Length = 287

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
 Frame = -1

Query: 638 KYKERS*SPNK*HIQSIISKRFIVMNRWKA*KTKGRSSTELVKYCSVDRRSQCFSELVYM 459
           KY++ S    K H++     RFI  +  +  + +   S  + K+    + S+ F   +Y+
Sbjct: 26  KYRQTSYFTIKIHVKDDPLYRFIDFDPSRTSRARNSHSLNIKKFLGTSQSSKTFRVDLYV 85

Query: 458 LFFCMCFLLVVGPLVSPRG*VPPPCLFLP*SNNAFWF-EGWGSRCNYTKTLELISQGG 288
             F       V P   P+    PP    P ++ A  F E    +  Y K L L++  G
Sbjct: 86  RTFHTSNACKVKPTPPPKNAYTPP--LPPKNSQALRFSEVDRLKAGYLKHLRLLTGAG 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,935,699
Number of Sequences: 59808
Number of extensions: 557892
Number of successful extensions: 1049
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)