Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30353
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21080.1 68415.m02502 expressed protein                             30   1.8  
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin...    29   3.2  
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i...    29   4.2  
At3g23940.1 68416.m03007 dehydratase family contains Pfam profil...    28   7.4  

>At2g21080.1 68415.m02502 expressed protein
          Length = 414

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -1

Query: 518 LVKYCSVDRRSQCFSELVYMLFFCMCFLLVVGPLVS 411
           L+K+C++D  S C   + YM+F  + F L+V PL+S
Sbjct: 38  LLKWCALDHSSSCGKAVSYMMF--VVFTLLV-PLIS 70


>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
           this genomic sequence region is unfinished, the
           annotated gene may be missing a stop codon or start
           codon
          Length = 487

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 42  GNSPSEEWRVGVHFALACGFSLVCDGSHHITQDI*RMPESRLRHFQDKLAFFFIA*MGGR 221
           G  PS  W   +H        + CDG H   +D+  M E+ L  F+  +++  +   G  
Sbjct: 57  GRKPSV-WDTFLHCRKMDNGDIACDGYHKYKEDVQLMAETGLHTFRFSISWSRLISNGRG 115

Query: 222 AHSPPGVKW 248
           + +P G+++
Sbjct: 116 SINPKGLQF 124


>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
           identical to cDNA CIP4.1 mRNA for COP1-interacting
           protein 4.1,  GI:13160649
          Length = 976

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +1

Query: 409 GLTRGPTTSKKHIQKNSIYTSSEKHWDRRSTEQYLTSSVEDL 534
           GLT GPTT KK  QK S      K     +T + + +  E +
Sbjct: 489 GLTTGPTTEKKKRQKKSSKNDINKSTAATTTSKIIVNEREKM 530


>At3g23940.1 68416.m03007 dehydratase family contains Pfam profile:
           PF00920 dehydratase family
          Length = 608

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 395 VPIRADSQEVLPPVKNTYKKTAYIQV 472
           VP   + QE++ P+ N  K+T +IQ+
Sbjct: 406 VPSLTEGQEIIRPLSNPIKETGHIQI 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,316
Number of Sequences: 28952
Number of extensions: 387596
Number of successful extensions: 841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)