Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30352
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0411 - 13622241-13622591,13622838-13623476,13624031-136241...    30   2.2  
03_05_1094 - 30348366-30348467,30348571-30348753,30348833-303489...    30   2.2  
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457...    29   3.9  

>05_03_0411 -
           13622241-13622591,13622838-13623476,13624031-13624177,
           13624364-13624486,13624609-13624784,13625168-13625444
          Length = 570

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 56  RRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDEL 193
           R ++GNK+ ++W ++   A   + ++K Y+TE  P        D+L
Sbjct: 232 RTILGNKLYQEWFNKRFNAAVFENELKWYATEPYPGKEDYTVADQL 277


>03_05_1094 -
           30348366-30348467,30348571-30348753,30348833-30348934,
           30349617-30349967,30350049-30350276,30350353-30350509,
           30351189-30351370,30351443-30351866,30351949-30352892,
           30353509-30353773,30354558-30355120
          Length = 1166

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 359 CRHFKSQCPRKIEYCMSLEYNHSV*CTCNI 448
           C    S+CPR  + C  L Y +SV   C+I
Sbjct: 523 CNPKPSKCPRPFDECSKLSYKYSVQSFCSI 552


>11_04_0418 -
           17443989-17444082,17445153-17445406,17445709-17445783,
           17446156-17446377,17446789-17446941,17447031-17447167,
           17447615-17447933
          Length = 417

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = +2

Query: 11  RFHS--ANANRIKMFPLRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTE 184
           RFH    NANR+K+  +++ + ++ +EQ +    + + AK QM+A   +   R L    E
Sbjct: 200 RFHKNEQNANRLKVLEIQQKLSSEKIEQAK---ISHLAAKEQMEAAKVQREARKL----E 252

Query: 185 DELAMRETSNQ 217
            E  M ET N+
Sbjct: 253 VEARMYETYNR 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,199,770
Number of Sequences: 37544
Number of extensions: 349446
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)