Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30352
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_24177| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-16)                 30   2.3  
SB_57841| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_35092| Best HMM Match : CAT (HMM E-Value=0.00074)                   28   9.2  

>SB_5023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 473 VTKYCRYENNSNKY--S*VVANIHYPYIEYDNKYNSYILRAVISLFT 607
           +T Y +Y ++S+ Y  S V  N +Y Y+ Y   +N+Y+L   I +FT
Sbjct: 399 MTSYAQYNSSSDYYLMSYVPHNANY-YLMYHIPHNAYVLYTPIRMFT 444


>SB_24177| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-16)
          Length = 423

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +3

Query: 636 LCSPLVYYKLRKSRQISPLAYDGRA*YFK-----LFATNG 740
           +C P+   +L  SR+I P  YDG   YF       FATNG
Sbjct: 362 ICFPIFGRQLYHSRRIHPSVYDGENNYFPTNLELCFATNG 401


>SB_57841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +3

Query: 636 LCSPLVYYKLRKSRQISPLAYDGRA*YFK-----LFATNG 740
           +C P+   +L  SR+I P  YDG   YF       FATNG
Sbjct: 362 ICFPIFGRQLYHSRRIHPSVYDGENNYFPTNLELCFATNG 401


>SB_35092| Best HMM Match : CAT (HMM E-Value=0.00074)
          Length = 105

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 420 IIAYNVLAT--SANCLTVMQLQNTVDTKTIRINIHKWSPIFITHT*SMIIN 566
           ++  +V AT  SA+    +QL  T   KT++ N HK+ P FI H  + ++N
Sbjct: 44  VVTRSVTATLASADVRRPVQLDITAFLKTVKKNKHKFYPAFI-HILARLMN 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,920,172
Number of Sequences: 59808
Number of extensions: 449561
Number of successful extensions: 945
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)