Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30352
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25490.1 68416.m03169 wall-associated kinase, putative simila...    30   1.4  
At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xy...    29   2.5  
At4g00750.1 68417.m00102 dehydration-responsive family protein s...    29   2.5  
At3g58940.1 68416.m06568 F-box family protein contains F-box dom...    29   2.5  
At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein si...    29   3.3  
At5g63760.2 68418.m08003 IBR domain-containing protein contains ...    27   9.9  
At5g63760.1 68418.m08002 IBR domain-containing protein contains ...    27   9.9  
At4g00740.1 68417.m00101 dehydration-responsive protein-related ...    27   9.9  
At3g44840.1 68416.m04831 S-adenosyl-L-methionine:carboxyl methyl...    27   9.9  

>At3g25490.1 68416.m03169 wall-associated kinase, putative similar
           to wall-associated kinase 4 GB:CAA08793 from
           [Arabidopsis thaliana]
          Length = 433

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
 Frame = +1

Query: 607 LKHTYYYL-ITYVARLFIISCEKVDKYRL*HMMVEHDTSNYLLLM 738
           L+H  Y + I +V  +F+I+C + +KY +  M++  +T+N L L+
Sbjct: 3   LQHVVYLVAIFFVVAIFVIACIEENKYLVWIMIILANTTNILSLV 47


>At4g33860.1 68417.m04804 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595; contains Pfam profile PF00331:
           Glycosyl hydrolase family 10
          Length = 576

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  RRVVGNKILEQWRSQATAAVGAKTQMKAYSTEV 154
           + ++GNK  + W +Q         +MK YSTEV
Sbjct: 233 KNILGNKAYQNWFTQRFTVTTFANEMKWYSTEV 265


>At4g00750.1 68417.m00102 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 633

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 162 RGVTSVLYAFI*VFAPTAAVAWDL-HCSKILLPTTRRNGNIFI 37
           RGV +++     +  P  A A+D+ HCS+ L+P  + NG   I
Sbjct: 261 RGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTYLI 303


>At3g58940.1 68416.m06568 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 618

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +2

Query: 35  RIKMFPLRRVVGNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDELAMRETSN 214
           ++  + L  VV  +I+  W+S A +   ++TQM     E+ PR    + +    MR  S+
Sbjct: 419 KVVAYRLHDVVSTEIVGHWQSSAQSGGWSQTQMDEMYYELAPRNKERIYDMFFFMRRASS 478


>At4g33850.1 68417.m04803 glycosyl hydrolase family 10 protein
           similar to tapetum specific protein GI:3885492 from [Zea
           mays]
          Length = 352

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  RRVVGNKILEQWRSQATAAVGAKTQMKAYSTEV 154
           + ++GN+  E W +Q         +MK YSTEV
Sbjct: 92  KNILGNQAYENWFTQRFTVTTFANEMKWYSTEV 124


>At5g63760.2 68418.m08003 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
           domain
          Length = 452

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 68  GNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDELAMRE 205
           G   L+ W +     V AK +++A+   +  +P  +  +D   +RE
Sbjct: 272 GISCLDLWNASQVNLVNAKYELEAFEESIIKKPSDLKEQDVKVLRE 317


>At5g63760.1 68418.m08002 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
           domain
          Length = 452

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 68  GNKILEQWRSQATAAVGAKTQMKAYSTEVTPRPLTMLTEDELAMRE 205
           G   L+ W +     V AK +++A+   +  +P  +  +D   +RE
Sbjct: 272 GISCLDLWNASQVNLVNAKYELEAFEESIIKKPSDLKEQDVKVLRE 317


>At4g00740.1 68417.m00101 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 117 PTAAVAWDL-HCSKILLPTTRRNGNIFI 37
           P  A ++DL HCS+ L+P T  N   FI
Sbjct: 261 PFPAYSFDLMHCSRCLIPFTAYNATYFI 288


>At3g44840.1 68416.m04831 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292][Mol Plant Pathol (2001)
           2(3):159-169]
          Length = 348

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 365 HFKSQCPRKIEYCMSLEYNHSV*CT 439
           HF S+ P+KI+ C S  +N  + CT
Sbjct: 144 HFLSKIPKKIKDCDSHAWNKDIHCT 168


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,228,399
Number of Sequences: 28952
Number of extensions: 301963
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)