BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30348 (696 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 249 3e-67 SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 29 0.84 SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 26 5.9 SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.9 SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 7.8 SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.8 >SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pombe|chr 2|||Manual Length = 1185 Score = 249 bits (610), Expect = 3e-67 Identities = 119/217 (54%), Positives = 155/217 (71%) Frame = +2 Query: 2 ILDEGGPEAFAKAVRQHKGLLLMDTTFRDAHQSLLATRVRTHDLLAVSPYVAHNFNNLYS 181 +L + GP AFAKAVR HK L+MDTT+RDAHQSLLATRVRT DL+ ++PY +H + YS Sbjct: 551 LLLDNGPAAFAKAVRNHKRGLIMDTTWRDAHQSLLATRVRTIDLVNIAPYTSHALASAYS 610 Query: 182 LENWGGATFDVALRFLHECPWERLHDMRQLIPNIPFQMLLRGANAVGYTNYPDNVVFKFC 361 LE WGGATFDV++RFLHECPW+RL +R+L+PNIPFQMLLRGAN + Y++ PDNV++ FC Sbjct: 611 LEMWGGATFDVSMRFLHECPWDRLRRLRKLVPNIPFQMLLRGANGLCYSSLPDNVIYFFC 670 Query: 362 DMAVQAGMDIFRVFDSLNYLPNLVLGMXXXXXXXXXXXXXISYTGDVSDPSXXXXXXXXX 541 + A + G+DIFRVFD+LN + NL LG+ + Y+GD+ +P Sbjct: 671 EQAKKNGIDIFRVFDALNDVNNLSLGIDAAKRAGGVVEATMCYSGDMLNPK-KKYNLDYY 729 Query: 542 XXXXXXXVKAGTHVLAIKDMAGLLKPQAAKLLIGAIR 652 V+ G H+L IKDMAG++KP+AA+LLI AIR Sbjct: 730 VNLVDKMVEMGIHILGIKDMAGVMKPKAARLLISAIR 766 >SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Sum3|Schizosaccharomyces pombe|chr 3|||Manual Length = 636 Score = 28.7 bits (61), Expect = 0.84 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Frame = -3 Query: 457 LRGC-LHAQYQVRQVVQRIENSEDVHSCLDGHVAELED-DVVGIVGVADRVR-AAEQHLE 287 +R C ++ +R +++I+ D+ S G + +L D + + + V A++ L+ Sbjct: 284 VRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLD 343 Query: 286 RNVRDQLPHVVETLPRTLVEESQ 218 Q+ H+VE T VEE Q Sbjct: 344 MGFEPQIRHIVEGADMTSVEERQ 366 >SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharomyces pombe|chr 3|||Manual Length = 642 Score = 25.8 bits (54), Expect = 5.9 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -1 Query: 303 RSNIWN-GMFGISCLMSWRRSHGHSWRNLKATSNVAPPQFS 184 ++ +W+ G +GI+ S +W+ +KA N PQ S Sbjct: 306 KTGVWSLGSWGIASPRGANSSFSLTWQQMKAIPNSLVPQLS 346 >SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 236 Score = 25.8 bits (54), Expect = 5.9 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -3 Query: 457 LRGCLHAQYQVRQVVQRIENSEDVHSCLDGHVAE 356 +RGCL+ +Y R ++ ++NS+ + C G + E Sbjct: 129 IRGCLNGRYLSRYLMLCLQNSKILIVCETGGLQE 162 >SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1004 Score = 25.4 bits (53), Expect = 7.8 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -3 Query: 475 LDDAACLRGCLHAQYQV 425 LDD L G LHAQY + Sbjct: 571 LDDTLVLEGTLHAQYYI 587 >SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces pombe|chr 1|||Manual Length = 1957 Score = 25.4 bits (53), Expect = 7.8 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%) Frame = -3 Query: 508 VRNVARIRDGGLDDAACLRGCLHA----QYQVRQVVQRIENSEDVHSCLDGHVAELEDDV 341 V++++ I+D +D LR + Q + + +E+ +DV + + AELED+V Sbjct: 1631 VKDLSNIKDSLSEDLRTLRSLEDSVASLQKECKIKSNTVESLQDVLTSVQARNAELEDEV 1690 Query: 340 VGIVGVADRVRAAEQHLE 287 V D++R + E Sbjct: 1691 SRSV---DKIRRRDDRCE 1705 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,261,615 Number of Sequences: 5004 Number of extensions: 39383 Number of successful extensions: 138 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 137 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -