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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30348
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...   249   3e-67
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    29   0.84 
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    26   5.9  
SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   7.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.8  

>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score =  249 bits (610), Expect = 3e-67
 Identities = 119/217 (54%), Positives = 155/217 (71%)
 Frame = +2

Query: 2    ILDEGGPEAFAKAVRQHKGLLLMDTTFRDAHQSLLATRVRTHDLLAVSPYVAHNFNNLYS 181
            +L + GP AFAKAVR HK  L+MDTT+RDAHQSLLATRVRT DL+ ++PY +H   + YS
Sbjct: 551  LLLDNGPAAFAKAVRNHKRGLIMDTTWRDAHQSLLATRVRTIDLVNIAPYTSHALASAYS 610

Query: 182  LENWGGATFDVALRFLHECPWERLHDMRQLIPNIPFQMLLRGANAVGYTNYPDNVVFKFC 361
            LE WGGATFDV++RFLHECPW+RL  +R+L+PNIPFQMLLRGAN + Y++ PDNV++ FC
Sbjct: 611  LEMWGGATFDVSMRFLHECPWDRLRRLRKLVPNIPFQMLLRGANGLCYSSLPDNVIYFFC 670

Query: 362  DMAVQAGMDIFRVFDSLNYLPNLVLGMXXXXXXXXXXXXXISYTGDVSDPSXXXXXXXXX 541
            + A + G+DIFRVFD+LN + NL LG+             + Y+GD+ +P          
Sbjct: 671  EQAKKNGIDIFRVFDALNDVNNLSLGIDAAKRAGGVVEATMCYSGDMLNPK-KKYNLDYY 729

Query: 542  XXXXXXXVKAGTHVLAIKDMAGLLKPQAAKLLIGAIR 652
                   V+ G H+L IKDMAG++KP+AA+LLI AIR
Sbjct: 730  VNLVDKMVEMGIHILGIKDMAGVMKPKAARLLISAIR 766


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = -3

Query: 457 LRGC-LHAQYQVRQVVQRIENSEDVHSCLDGHVAELED-DVVGIVGVADRVR-AAEQHLE 287
           +R C ++    +R  +++I+   D+ S   G + +L D   + +  +   V   A++ L+
Sbjct: 284 VRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLD 343

Query: 286 RNVRDQLPHVVETLPRTLVEESQ 218
                Q+ H+VE    T VEE Q
Sbjct: 344 MGFEPQIRHIVEGADMTSVEERQ 366


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 303 RSNIWN-GMFGISCLMSWRRSHGHSWRNLKATSNVAPPQFS 184
           ++ +W+ G +GI+       S   +W+ +KA  N   PQ S
Sbjct: 306 KTGVWSLGSWGIASPRGANSSFSLTWQQMKAIPNSLVPQLS 346


>SPAC22G7.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 457 LRGCLHAQYQVRQVVQRIENSEDVHSCLDGHVAE 356
           +RGCL+ +Y  R ++  ++NS+ +  C  G + E
Sbjct: 129 IRGCLNGRYLSRYLMLCLQNSKILIVCETGGLQE 162


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 475 LDDAACLRGCLHAQYQV 425
           LDD   L G LHAQY +
Sbjct: 571 LDDTLVLEGTLHAQYYI 587


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = -3

Query: 508  VRNVARIRDGGLDDAACLRGCLHA----QYQVRQVVQRIENSEDVHSCLDGHVAELEDDV 341
            V++++ I+D   +D   LR    +    Q + +     +E+ +DV + +    AELED+V
Sbjct: 1631 VKDLSNIKDSLSEDLRTLRSLEDSVASLQKECKIKSNTVESLQDVLTSVQARNAELEDEV 1690

Query: 340  VGIVGVADRVRAAEQHLE 287
               V   D++R  +   E
Sbjct: 1691 SRSV---DKIRRRDDRCE 1705


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,615
Number of Sequences: 5004
Number of extensions: 39383
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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