Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30348
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0237 - 22235757-22236979,22238564-22238567 30 1.5
12_02_0512 - 19889845-19890468,19890958-19891413,19891727-19892215 30 2.0
11_06_0511 - 24434007-24436814 29 2.7
03_05_0489 - 24858483-24858637,24858811-24858921,24859013-248594... 29 2.7
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 29 4.7
12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220... 28 6.2
07_01_0395 + 2985513-2986018,2986227-2986268,2986494-2986521 28 6.2
07_01_0123 - 927691-929223,930050-930268 28 6.2
05_01_0152 + 1008642-1008719,1008797-1009300 28 6.2
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 28 6.2
03_01_0622 + 4578018-4578043,4578397-4578526,4578738-4578794,457... 28 6.2
01_03_0050 + 11959421-11959736,11959892-11959960,11960641-119609... 28 6.2
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 28 8.1
07_03_1415 + 26410999-26411148,26411228-26411290,26412623-264126... 28 8.1
07_01_0171 - 1198403-1199059,1200022-1200258 28 8.1
03_05_0461 + 24549079-24550464 28 8.1
>03_05_0237 - 22235757-22236979,22238564-22238567
Length = 408
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Frame = +2
Query: 53 KGLLLMDTTF--RDAHQSLLATR----VRTHDLLAVSPYVAHNFNNLYSLENWGGA-TFD 211
+G +LMD R H + L T+ +R H + +P + H F+ L L WGG T+D
Sbjct: 316 QGNVLMDHALFLRLNHSACLPTQNLPGIRPHCIYFSAPVIIHAFDWLLGLRVWGGVRTYD 375
Query: 212 V 214
V
Sbjct: 376 V 376
>12_02_0512 - 19889845-19890468,19890958-19891413,19891727-19892215
Length = 522
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -3
Query: 505 RNVARIRDGGLDDAACLRGCLHAQY-QVRQVVQRIENSEDVHSCLDGHVAELEDDVVGIV 329
R V ++ L A ++ +A++ QV +++ + +E LD H+ L D ++G V
Sbjct: 137 REVRKLLMVELLSARRVKAAWYARHEQVEKLLSTLRRAEGKPVALDEHILSLSDGIIGTV 196
Query: 328 GVADRVRAAEQHLERNVRDQLPHVVETL 245
+ + + +N + L V+E L
Sbjct: 197 AFGNIYGSDKFSQNKNFQHALDDVMEML 224
>11_06_0511 - 24434007-24436814
Length = 935
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 577 STGLHQIVGQLRVILQVVFSFAGVRNVARIRDGGLDDAACLRGCLHAQYQVRQVVQRIEN 398
S LH I G +++ Q + SFA +R + G+D+ G L QV VV +I
Sbjct: 847 SLRLHNISGISKLVFQAINSFANLRTLLLHEIDGVDELEIPNGSL-GSLQVLHVV-KISQ 904
Query: 397 SEDVH 383
+H
Sbjct: 905 LNSIH 909
>03_05_0489 -
24858483-24858637,24858811-24858921,24859013-24859421,
24859746-24859800,24860042-24860318,24860442-24860562,
24860831-24861438,24861552-24861741
Length = 641
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 16 WPRGLRQSGPAAQGSAPDGHDVPGRAPVAAGH*G 117
W L SGPA SA G D+ +AP A G G
Sbjct: 12 WATQLSASGPATAPSAGAGFDLNSQAPAAEGFPG 45
>07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 92 HQSLLATRVRTHDLLAVSPYVAHNFNNLYSLENWGGATFDVAL 220
H LL T D VSP + HNF NWG ++D +
Sbjct: 948 HIELLVNAGITQD---VSPVIPHNFIEALKKYNWGAFSYDARI 987
>12_02_0875 -
23920023-23920967,23921045-23921599,23921678-23922083,
23922175-23922452
Length = 727
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 184 RELGRSYIRRGLEIPPRVSVGASPRHEAADPEHSVPDVAPRR 309
RE+ + I R + + GA P AADP P V P+R
Sbjct: 686 REVAQGGILRAVAVAAAAHRGAPPEPRAADPASWPPLVVPQR 727
>07_01_0395 + 2985513-2986018,2986227-2986268,2986494-2986521
Length = 191
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -3
Query: 571 GLHQIVGQLRVILQVVFSFAGVRNVARIRDGGLDDAACLRG 449
G IVG LR V GV +V GG+D A C RG
Sbjct: 57 GDKSIVGGLRGGGSVARELGGVGSVVGFVGGGVDPAGCARG 97
>07_01_0123 - 927691-929223,930050-930268
Length = 583
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 98 TGARPGTSCPSGADPCAAGPLWRRPR 21
+ A G + +G D C AG +WRR R
Sbjct: 24 SAAGDGAAKEAGGDSCGAGRIWRRRR 49
>05_01_0152 + 1008642-1008719,1008797-1009300
Length = 193
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 80 TSCPSGADPCAAGPLWRRPRGH 15
T P+G D A G LWRRP G+
Sbjct: 96 TDAPAG-DEAATGELWRRPDGY 116
>04_04_1574 -
34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = -3
Query: 433 YQVRQVVQRIENSEDVHSCLDGHVAELEDDVVG---IVGVADRVRAAEQHLERNVRDQLP 263
YQ+ V ++ E E V + ++ AE+ED + +V V D++ EQ +++++LP
Sbjct: 85 YQILGVTEKAEKDEIVKAAMELKNAEIEDGYMAEALLVDVRDKL-LFEQEYAGSIKEKLP 143
>03_01_0622 +
4578018-4578043,4578397-4578526,4578738-4578794,
4579666-4579827
Length = 124
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -3
Query: 400 NSEDVHSCLDGHVAELEDDVVGIVGVADRVRAAEQHLERNVRDQLPHVVETLPRTLVEES 221
+S ++ +D A+L+D +VG+ G ++R Q ++ + Q + L TL +
Sbjct: 21 SSSEISLQIDPITADLDDHIVGLRGQVRKLRGVAQEIQTEAKYQ-NDFISQLQMTLTKAQ 79
Query: 220 QG 215
G
Sbjct: 80 AG 81
>01_03_0050 +
11959421-11959736,11959892-11959960,11960641-11960979,
11961090-11961152,11962472-11962962,11963773-11964441
Length = 648
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 142 DGEQVVGPH--PSGQQRLVRVPERRVH 68
D EQ G P G+QRLV +PER VH
Sbjct: 38 DEEQQEGEDTAPCGEQRLVLLPERSVH 64
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -3
Query: 424 RQVVQ-RIENSEDVHSCLDGHVAELEDDVVGIVGVADRVRAAEQHLE--RNVRDQLPHVV 254
RQ V+ +I+ ED +DG +A L+DD+ D+ A L R++ + H
Sbjct: 257 RQAVRDKIKVLEDQIHAVDGEIAALQDDLTAATARKDKAFEALNELRKTRDLNNTSFHQY 316
Query: 253 ETLPRTLVE-ESQGHVE 206
T+ ++ + ++G VE
Sbjct: 317 RTISNSVRDLSARGEVE 333
>07_03_1415 +
26410999-26411148,26411228-26411290,26412623-26412694,
26412798-26412905,26413023-26413103,26413176-26413229,
26413282-26413315,26413405-26413451,26413538-26413747,
26413861-26413962,26414240-26414356,26414460-26414531,
26414645-26414719,26414866-26414970
Length = 429
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +1
Query: 541 HEAGRRSGEGRYSRARYQRHGRTAEAPGCEVAD 639
+E GR GEG + + + RH T A ++ D
Sbjct: 6 YEMGRALGEGHFGKVKLARHADTGAAFAIKILD 38
>07_01_0171 - 1198403-1199059,1200022-1200258
Length = 297
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = -3
Query: 403 ENSEDVHSCLDGHVAELEDDVVGIVGVADRVRAAEQHLE--RNVRDQLPHVVETLPRTLV 230
E E V DG E E++V +VG+++ + + E+ L ++++ Q + ET+ + +
Sbjct: 38 EGGEAVKRLCDGEEGEEEEEVESLVGISNALESLERQLASLQDLQHQQRYERETI-LSQI 96
Query: 229 EESQG 215
+ S+G
Sbjct: 97 DRSRG 101
>03_05_0461 + 24549079-24550464
Length = 461
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 196 RSYIRRGLEIPPRVSVGASPRHEAA 270
R+ +RR LE PP + G SP H+AA
Sbjct: 367 RNIVRRPLEFPPDAAGGGSP-HDAA 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,829,239
Number of Sequences: 37544
Number of extensions: 320400
Number of successful extensions: 1305
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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