Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30348
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.) 260 6e-70
SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.) 252 2e-67
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 31 1.2
SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6) 29 3.6
SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59) 29 3.6
SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6) 29 3.6
SB_34049| Best HMM Match : PSI (HMM E-Value=2.6) 29 3.6
SB_12589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 28 6.3
SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1058
Score = 260 bits (638), Expect = 6e-70
Identities = 121/193 (62%), Positives = 143/193 (74%)
Frame = +2
Query: 17 GPEAFAKAVRQHKGLLLMDTTFRDAHQSLLATRVRTHDLLAVSPYVAHNFNNLYSLENWG 196
GP+ FA AVR+ LL+ DTTFRDAHQSLLATRVRTHD++ ++P+V+H F N +SLE WG
Sbjct: 590 GPQGFASAVRKLDRLLITDTTFRDAHQSLLATRVRTHDMVKIAPFVSHYFANAFSLECWG 649
Query: 197 GATFDVALRFLHECPWERLHDMRQLIPNIPFQMLLRGANAVGYTNYPDNVVFKFCDMAVQ 376
GATFDVALRFL+ECPW+RL ++R+ IPNIPFQMLLRGANAVGYT+YPDNVV++FC A
Sbjct: 650 GATFDVALRFLYECPWDRLTELREQIPNIPFQMLLRGANAVGYTSYPDNVVYQFCQKATD 709
Query: 377 AGMDIFRVFDSLNYLPNLVLGMXXXXXXXXXXXXXISYTGDVSDPSXXXXXXXXXXXXXX 556
GMDIFRVFDSLNYLPNL LG+ ISYTGDV+DPS
Sbjct: 710 RGMDIFRVFDSLNYLPNLQLGIDAAGQAGAIVEAAISYTGDVTDPSRTKYNIDYYMDLAS 769
Query: 557 XXVKAGTHVLAIK 595
K+GTH+L IK
Sbjct: 770 KLAKSGTHILCIK 782
Score = 95.1 bits (226), Expect = 5e-20
Identities = 41/66 (62%), Positives = 53/66 (80%)
Frame = +2
Query: 17 GPEAFAKAVRQHKGLLLMDTTFRDAHQSLLATRVRTHDLLAVSPYVAHNFNNLYSLENWG 196
GP+ FA AVR+ LL+ DTTFRDAHQSLLATRVRTHD++ ++P+V+H F N +SLE WG
Sbjct: 496 GPQGFASAVRKLDRLLITDTTFRDAHQSLLATRVRTHDMVKIAPFVSHYFANAFSLECWG 555
Query: 197 GATFDV 214
G+ D+
Sbjct: 556 GSPVDI 561
>SB_46548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 252 bits (617), Expect = 2e-67
Identities = 121/198 (61%), Positives = 142/198 (71%)
Frame = +2
Query: 17 GPEAFAKAVRQHKGLLLMDTTFRDAHQSLLATRVRTHDLLAVSPYVAHNFNNLYSLENWG 196
GP+ FA+ VR+ L L DTTFRDAHQSLLATRVRTHD++ ++P+V+H F N YSLE WG
Sbjct: 432 GPDGFARYVRKMDRLQLTDTTFRDAHQSLLATRVRTHDMVKIAPFVSHYFANAYSLECWG 491
Query: 197 GATFDVALRFLHECPWERLHDMRQLIPNIPFQMLLRGANAVGYTNYPDNVVFKFCDMAVQ 376
GATFDVALRFL+ECPW+RL ++R+ IPNIPFQMLLRGANAVGYT+YPDNVV +FC A
Sbjct: 492 GATFDVALRFLNECPWDRLAELREQIPNIPFQMLLRGANAVGYTSYPDNVVHQFCKKAKD 551
Query: 377 AGMDIFRVFDSLNYLPNLVLGMXXXXXXXXXXXXXISYTGDVSDPSXXXXXXXXXXXXXX 556
GMDIFRVFDSLNY+PNL LG+ ISYTGDV+DPS
Sbjct: 552 HGMDIFRVFDSLNYVPNLQLGIDAAGQAGAIVEAAISYTGDVTDPSRTKYNIDYYMDLAT 611
Query: 557 XXVKAGTHVLAIKDMAGL 610
++G HVL IK A L
Sbjct: 612 KLARSGAHVLCIKIKAML 629
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 578 HVLAIKDMAGLLKPQAAKLLIGAIRA 655
H ++DMAGLLKP+AA LL+G+IRA
Sbjct: 674 HEDGLRDMAGLLKPKAAHLLVGSIRA 699
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 508 VRNVARIRDGGLDDAACLRGCLHAQYQ 428
+R RI DGGL D CL+G H Q
Sbjct: 675 IREYCRIEDGGLLDDTCLQGSKHTHKQ 701
>SB_15426| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
Length = 224
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 98 TGARPGTSCPSGADPCAA 45
TG G SCP ADPC+A
Sbjct: 18 TGTSDGRSCPRPADPCSA 35
>SB_11816| Best HMM Match : zf-piccolo (HMM E-Value=0.59)
Length = 351
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 98 TGARPGTSCPSGADPCAA 45
TG G SCP ADPC+A
Sbjct: 18 TGTSDGRSCPRPADPCSA 35
>SB_2503| Best HMM Match : Kunitz_BPTI (HMM E-Value=4.6)
Length = 224
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 98 TGARPGTSCPSGADPCAA 45
TG G SCP ADPC+A
Sbjct: 18 TGTSDGRSCPRPADPCSA 35
>SB_34049| Best HMM Match : PSI (HMM E-Value=2.6)
Length = 279
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 98 TGARPGTSCPSGADPCAA 45
TG G SCP ADPC+A
Sbjct: 18 TGTSDGRSCPRPADPCSA 35
>SB_12589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1255
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 ENWGGATFDVALRFLHECP-WERLHDMRQLIPNIP 286
E WGG FD A+ H W + R+ P +P
Sbjct: 1052 EEWGGVAFDAAIEQAHPSDMWRLIEHHRKNYPRLP 1086
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +2
Query: 95 QSLLATRVRTHDLLAVSPYVAHNFNNLYSLENWGGATFDVALRFLHEC 238
+SL++ V+ + VSP++ + L++L++ G+ D+ L EC
Sbjct: 2496 ESLMSRGVQPFKIWIVSPFLRQRHSILHALDSTLGSQLDIRLTSPEEC 2543
>SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = -3
Query: 421 QVVQRIENSEDVHSCLDGHVAELEDDVVGIVGVADRVRAAEQHLERNVRDQL 266
+VV E +ED ++ E E+++ G+V V D + E+ + ++D L
Sbjct: 500 KVVDDEEQAEDSNNPSAEEEGEYEEEIYGLVSVLDLAQHKEKQCVKQIKDLL 551
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,134,987
Number of Sequences: 59808
Number of extensions: 328866
Number of successful extensions: 1473
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -