Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30348
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56290.1 68418.m07026 peroxisomal targeting signal type 1 rec...    30   1.3  
At3g31900.1 68416.m04029 hypothetical protein                          30   1.7  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   2.2  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   2.2  
At3g32280.1 68416.m04116 hypothetical protein                          29   2.2  
At4g17585.1 68417.m02629 hypothetical protein                          29   2.9  
At5g56740.1 68418.m07081 histone acetyltransferase family protei...    29   3.9  
At1g70550.2 68414.m08120 expressed protein similar to hypothetic...    29   3.9  
At1g70550.1 68414.m08119 expressed protein similar to hypothetic...    29   3.9  
At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative (CH...    28   6.8  
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,...    27   9.0  

>At5g56290.1 68418.m07026 peroxisomal targeting signal type 1
           receptor (PEX5) identical to GI:3603353; contains Pfam
           profile PF00515 TPR Domain
          Length = 728

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 5   LDEGGPEAFAKAVRQHKGLLLMDTTFRDAHQSLLATRVRTHDL 133
           +D GGP+++ ++  Q  G+    T F      L+++++R+ D+
Sbjct: 249 MDHGGPDSWVQSFEQQHGVNGWATEFEQGQSQLMSSQMRSMDM 291


>At3g31900.1 68416.m04029 hypothetical protein
          Length = 393

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -3

Query: 424 RQVVQRIENSEDVHSCLDGHVAE--LEDDVVGIVGVADRVRAAEQHLERN---VRDQLPH 260
           R+ V  +EN E   SC+DG+VA    +    G+V V     A E+++ +N   +R  L H
Sbjct: 20  RKKVVALENQETGGSCVDGNVAHWFSKTKFNGLVDVPIVYLALEENVVKNDLTLRSSLKH 79

Query: 259 VV 254
           V+
Sbjct: 80  VI 81


>At5g45050.2 68418.m05524 disease resistance protein-related similar
           to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
           profiles PF03106: WRKY DNA -binding domain, PF00931:
           NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 279 FGISCLMSWRRSHGHSWR 226
           FGISC+  W+   GHS R
Sbjct: 902 FGISCVCKWKNKEGHSHR 919


>At5g45050.1 68418.m05523 disease resistance protein-related similar
           to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
           profiles PF03106: WRKY DNA -binding domain, PF00931:
           NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 279 FGISCLMSWRRSHGHSWR 226
           FGISC+  W+   GHS R
Sbjct: 930 FGISCVCKWKNKEGHSHR 947


>At3g32280.1 68416.m04116 hypothetical protein
          Length = 474

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = -3

Query: 424 RQVVQRIENSEDVHSCLDGHVAE--LEDDVVGIVGVADRVRAAEQHLERN---VRDQLPH 260
           R+ V  +EN E   SC+DG+VA    +    G+V V     A E+++ +N   +R  L H
Sbjct: 115 RKKVVALENQEAGGSCVDGNVAHWFSKTKFNGLVDVPIVYLALEENVVKNDLTLRSSLKH 174

Query: 259 VV 254
           V+
Sbjct: 175 VI 176


>At4g17585.1 68417.m02629 hypothetical protein
          Length = 152

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 355 LEDDVVGIVGVADRVRAAEQHLERNVRDQLPHVVETLPRTLVEESQGHV 209
           + + V+  +    R  AAE H ERN    + H ++ LP+++    Q HV
Sbjct: 100 ISEKVILSMAARGRESAAEPH-ERNEAGNVCHSIKFLPKSIARAKQHHV 147


>At5g56740.1 68418.m07081 histone acetyltransferase family protein
           similar to histone acetyltransferase HAT B [Zea mays]
           GI:5579441;  identical to cDNA histone acetyltransferase
           partial cds GI:21637256
          Length = 467

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 100 RLVRVPER-RVHQEQTLVLPDRFGEGLGATLVE 5
           +  R P+R R+   Q LVLP   G+GLG+ L+E
Sbjct: 234 KFYRYPDRLRMRLSQILVLPSFQGKGLGSYLME 266


>At1g70550.2 68414.m08120 expressed protein similar to hypothetical
           protein GB:AAD31338 [Arabidopsis thaliana] and to
           putative putative carboxyl-terminal peptidase
           GB:AAC16072 [Arabidopsis thaliana] contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 410

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 315 AFAPRSNIWNGMFGISCLMSWRRSHGHSW 229
           A +PRS+   G F IS L+     HGH W
Sbjct: 265 AISPRSSYKGGQFDISLLIWKDPKHGHWW 293


>At1g70550.1 68414.m08119 expressed protein similar to hypothetical
           protein GB:AAD31338 [Arabidopsis thaliana] and to
           putative putative carboxyl-terminal peptidase
           GB:AAC16072 [Arabidopsis thaliana] contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 465

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 315 AFAPRSNIWNGMFGISCLMSWRRSHGHSW 229
           A +PRS+   G F IS L+     HGH W
Sbjct: 320 AISPRSSYKGGQFDISLLIWKDPKHGHWW 348


>At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative
           (CHX26) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 780

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = -3

Query: 397 SEDVHSCLDGHVAELEDDVVGIVGVADRVRAAEQHLERNVRDQLPHVVETL 245
           S+ +H  +     E E D++ I G+AD   AAE+ L RNVR+  P  V  L
Sbjct: 559 SKTMHEDVCALAFEKETDLI-IFGMADGT-AAERRLCRNVRNASPSSVAVL 607


>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
           putative similar to EF-1-alpha-related GTP-binding
           protein gi|1009232|gb|AAA79032
          Length = 532

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 418 VVQRIENSEDVHSCLDGHVAELEDDVVGIVGVADRVRAAEQHLE 287
           V+  + NS +V + LD    +L+D+V   + V D   A+E H E
Sbjct: 22  VIPEVHNSHEVEN-LDKAPEDLKDEVQESIPVPDEQEASEDHDE 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,701
Number of Sequences: 28952
Number of extensions: 220924
Number of successful extensions: 721
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)