Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30346
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 27 2.1
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 26 4.9
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 4.9
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 6.5
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 6.5
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 6.5
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.6
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 8.6
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.6
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 8.6
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 25 8.6
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 188 YGLVEHRDWANGGGGGVDAPSRERD 114
Y L E +W GG GV AP+ E D
Sbjct: 167 YPLPEGEEWMVGGSFGVMAPNNEED 191
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 544 SRRPCATSIKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 657
SR I R DT + + S PPVT ++ WKA+D+
Sbjct: 39 SRSTPINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +3
Query: 93 PPNTTLSIPLPTRRVNTPAPAVRPITMFDQPIPWAPKVKYLGVT 224
PP + + P PT NTPA T+ IP P V +G T
Sbjct: 211 PPGFSPATPAPTSAANTPA------TIAATSIPPVPNVPLVGAT 248
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 191 RYGLVEHRDWANGGGGGVDAPSRERD 114
+Y L+E +DW GG G+ P+ + +
Sbjct: 193 KYPLLEGKDWKIGGSFGIMPPNSDAE 218
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 663 KHVISDPPDPLTVLLGTSSTGH 728
+H++ +PP PLTVL GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 27 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 122
F+ W+ P+ S +L ++G PP + LS L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 53 PHEKHSGALQKGSPSEHHAEHPSPD 127
PHEKH L++ S + H E S D
Sbjct: 163 PHEKHFRPLRQRSSVDDHQEFESED 187
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 395 YTCIGHDGAYASFVECHLISKGHFTSP 315
Y +G DG Y S EC S+ FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 99 NTTLSIPLPTRRVNTPAPAVRP 164
N T S PLPT N P P P
Sbjct: 172 NYTASSPLPTASANAPLPVPPP 193
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 63 STAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRP 164
ST +L K+ RP PLP + P+ VRP
Sbjct: 382 STGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Frame = +2
Query: 41 HRHQPHEKHSGALQKGSPSEHHAEH-PSP 124
H H H HS SP+E H PSP
Sbjct: 302 HHHHHHHHHSHDDDPSSPAEKKQNHVPSP 330
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,987
Number of Sequences: 5004
Number of extensions: 74211
Number of successful extensions: 241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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