Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30346
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.15
At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17... 32 0.35
At2g25605.1 68415.m03067 expressed protein 31 0.61
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 30 1.4
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 30 1.4
At1g08170.1 68414.m00902 histone H2B family protein similar to h... 30 1.4
At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to e... 29 2.4
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 29 2.4
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 26 2.9
At5g14600.1 68418.m01712 expressed protein 29 4.3
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot... 29 4.3
At4g17500.1 68417.m02618 ethylene-responsive element-binding pro... 29 4.3
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 28 5.7
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 28 5.7
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 5.7
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 28 5.7
At5g48657.2 68418.m06021 defense protein-related weak similarity... 28 7.5
At5g48657.1 68418.m06020 defense protein-related weak similarity... 28 7.5
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 28 7.5
At3g11680.1 68416.m01432 expressed protein contains Pfam profile... 28 7.5
At1g11500.1 68414.m01321 expressed protein 28 7.5
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 27 9.9
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 27 9.9
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 27 9.9
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +2
Query: 116 PSPD*ARQHPRPRRSPNHDVRPAHTVGPEGQVLRRHPRQ*DDIPPPH*DGTRPCRLHSRT 295
P P AR P P + ++D RP + P+ + R + R+ D++PPP +RP +S
Sbjct: 560 PMPPPARARPLPPPARSYDRRPPVPLYPKASLKRDYDRR-DELPPPR---SRPAVSYSSR 615
Query: 296 SLPD 307
P+
Sbjct: 616 LSPE 619
>At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17
(CLE17)
Length = 99
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 127 LGASTPPPPPFAQSRCSTSPYRG 195
L AS PPPPP R ST+P+RG
Sbjct: 53 LVASPPPPPPRKALRYSTAPFRG 75
>At2g25605.1 68415.m03067 expressed protein
Length = 200
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +3
Query: 546 SASMRHFDKAARHENPLIVAAGNYIPD--PADRMESSRRRP 662
SA+++HF+ R L+ A+ + +PD AD +ES R+RP
Sbjct: 16 SANVKHFNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRP 56
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 55 PRKAQRCSSKGVALRTPR*ASLSRLGASTPPPPP 156
PRK R S LR R +S S +S PPPPP
Sbjct: 370 PRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPPP 403
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 55 PRKAQRCSSKGVALRTPR*ASLSRLGASTPPPPP 156
PRK R S LR R +S S +S PPPPP
Sbjct: 377 PRKISRSRSPKRPLRGKRSSSNSSSSSSPPPPPP 410
>At1g08170.1 68414.m00902 histone H2B family protein similar to
histone H2B from Chlamydomonas reinhardtii [SP|P54347,
SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
SP|P16868]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 243
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 102 TTLSIPLPTRRVNTPAPAVRPITMFDQPIPWAPK 203
TT+ IP+ R ++P P P+ + D+P P P+
Sbjct: 79 TTVKIPVDDRDESSPQPPETPVEVRDEPSPQPPE 112
>At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to
expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
gene family, PMID:11641069
Length = 296
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +2
Query: 65 HSGALQKGSPSEH--HAEHPSPD*ARQHPRPRRSPNHDVRPAHTVGPEGQVLRRHPRQ 232
H+ + G P H H HP+ HP P+H P+H P L H Q
Sbjct: 14 HASHVPGGRPGAHPSHGAHPAHG---AHPSHGAHPSHGAHPSHGAHPSHGALPSHGGQ 68
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 81 KRGRPPNTTLSIPLPTRRVNTPAPAVRPITMFDQPIPWAPK 203
K G P + T S P P + + +P+ P+T P P APK
Sbjct: 206 KSGSPVSPTTSPPAPPKSTSPVSPSSAPMT--SPPAPMAPK 244
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 26.2 bits (55), Expect(2) = 2.9
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Frame = +1
Query: 130 GASTPPPPP--FAQSRCSTSPYRGXXXXXXXXXXXXVG*HSAPTLRRYATVPPSF*DVS 300
GA PPPPP SR + P+ +G P L R PP+ +S
Sbjct: 648 GAPPPPPPPPMLVASRTAPPPHLSHVRSIPFQTRLVMGTSPLPLLVREGAPPPTLPSMS 706
Score = 21.4 bits (43), Expect(2) = 2.9
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 118 LSRLGASTPPPP 153
L R+G+ +PPPP
Sbjct: 632 LVRVGSPSPPPP 643
>At5g14600.1 68418.m01712 expressed protein
Length = 318
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +1
Query: 538 ICSRRPCATSIKRHDTRTLSSWPPVTTFPILRTEWKAVDVAQNTSSRILPIH 693
+CS PC ++R S + + TF +L ++ +V +TSS + H
Sbjct: 209 LCSFSPCIEQVQRTCEVLRSDFIEIRTFEVLLRTYEVKEVKMDTSSMVGESH 260
>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
similar to guanine nucleotide exchange factor [Homo
sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
domain
Length = 1706
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/99 (20%), Positives = 41/99 (41%)
Frame = +3
Query: 333 LRNKVTLYKTCIRPVMTYASVVFAHAARIQLKSFQIIQSRFCRIAVGAPWFVRNVDLHDD 512
+ ++T+Y CIR ++T+ + F I + + + RFC + + V N L ++
Sbjct: 1203 IETEITVYADCIRCLITFTNSKF--EGDIGFNTIEFL--RFCALKLEEGGLVLNEKLKNN 1258
Query: 513 LDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDP 629
+ + S D+ + PL+ + DP
Sbjct: 1259 TISALKEDFSDTQSFTDLDEQVSYWIPLLTGLCKQVSDP 1297
>At4g17500.1 68417.m02618 ethylene-responsive element-binding
protein 1 (ERF1) / EREBP-2 protein identical to
SP|O80337 Ethylene responsive element binding factor 1
(EREBP-2 protein) [Arabidopsis thaliana]; a false single
bp exon was added to circumvent a single basepair
insertion in the genomic sequence, supported by
cDNA/genome alignment.
Length = 188
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 608 GGHDERVLVSCRFIEVAHGRRLQIL 534
GG D+ + V C +EVA G RL +L
Sbjct: 164 GGMDKGLTVKCEVVEVARGDRLLVL 188
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 93 PPNTTLSIPLPTRRVNTPAPAVRP-ITMFDQPIPWAP 200
PP T S+P PT V+ P P P + P+P P
Sbjct: 137 PPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDP 173
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 59 EKHSGALQKGSPSEHHAEHPSPD*ARQHPRPRRSPNHD 172
++++G+ ++ SPS + PSPD R RRSP +D
Sbjct: 147 DRYAGSRRRRSPSPVYRRRPSPDYTR-----RRSPEYD 179
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 59 EKHSGALQKGSPSEHHAEHPSPD*ARQHPRPRRSPNHD 172
++++G+ ++ SPS + PSPD R RRSP +D
Sbjct: 173 DRYAGSRRRRSPSPVYRRRPSPDYTR-----RRSPEYD 205
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 90 RPPNTTLSIP--LPTRRVNTP--APAVRPITMFDQPIP-WAPKVKYLGVTLDSRMTFRPH 254
+PP T S P LP + TP +P V+P + P P ++P VK V T+ P
Sbjct: 410 KPPTPTYSPPIKLPPVKPPTPIYSPPVKPPPVHKPPTPIYSPPVKPPPVHKPPTPTYSPP 469
Query: 255 IK 260
IK
Sbjct: 470 IK 471
>At5g48657.2 68418.m06021 defense protein-related weak similarity to
SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
thaliana}
Length = 219
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 89 SPSEHHAEHPSPD*ARQHPRP-RRSPNHDVRPAH 187
+P+E+ +P+ R RP ++ PNH+VRP H
Sbjct: 37 NPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRH 70
>At5g48657.1 68418.m06020 defense protein-related weak similarity to
SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis
thaliana}
Length = 245
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 89 SPSEHHAEHPSPD*ARQHPRP-RRSPNHDVRPAH 187
+P+E+ +P+ R RP ++ PNH+VRP H
Sbjct: 5 NPNEYPDMNPNAAQNRNMSRPDQQPPNHNVRPRH 38
>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein similar
to SP|P36607 DNA repair protein rad8 {Schizosaccharomyces
pombe}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00646: F-box domain
Length = 1378
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 598 MRGFSCRAALSKWRMDADCRYLLMDSKSRSSWRSTFLTN 482
M+ ++ AL+ ++ DADC LLMD +F+T+
Sbjct: 1227 MQSYNKMKALAMFQNDADCMALLMDGSGALGLDLSFVTH 1265
>At3g11680.1 68416.m01432 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 488
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -3
Query: 241 VILLSRVTPKYLTFGAHGMGW---SNIVIGRTAGAGVLTRLVGRGMLSVVFG 95
V LL V P Y++FG GM W + +V+ G L++ + RG +++ G
Sbjct: 58 VSLLYYVRPLYISFGVTGM-WAILTVVVVFEFTVGGTLSKGLNRGFATLIAG 108
>At1g11500.1 68414.m01321 expressed protein
Length = 178
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 41 HRHQPHEKHSGALQKGSPSE 100
H HQ H +HSG+ + SPS+
Sbjct: 37 HHHQQHSRHSGSGCRRSPSD 56
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Frame = +2
Query: 53 PHEKHSGALQKGSPSEHHAEHPSPD*ARQHPRPRR-SPNHDVRPAHTVGPEGQVLRRHPR 229
P +H P H + P P HP P SP H P+ P +P
Sbjct: 14 PSHQHPLPSPVPPPPSHISPPPPPFSPPHHPPPPHFSPPHQPPPSPYPHPHPPPPSPYPH 73
Query: 230 Q*DDIPPPH 256
PPPH
Sbjct: 74 PHQPPPPPH 82
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/73 (28%), Positives = 26/73 (35%)
Frame = +2
Query: 86 GSPSEHHAEHPSPD*ARQHPRPRRSPNHDVRPAHTVGPEGQVLRRHPRQ*DDIPPPH*DG 265
G+P H + P P +P+H P+HT P P P PH
Sbjct: 46 GTPPSHTPPSSNCGSPPYDPSPS-TPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPH--- 101
Query: 266 TRPCRLHSRTSLP 304
T PC S S P
Sbjct: 102 TPPCNCGSPPSHP 114
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/73 (28%), Positives = 26/73 (35%)
Frame = +2
Query: 86 GSPSEHHAEHPSPD*ARQHPRPRRSPNHDVRPAHTVGPEGQVLRRHPRQ*DDIPPPH*DG 265
G+P H + P P +P+H P+HT P P P PH
Sbjct: 46 GTPPSHTPPSSNCGSPPYDPSPS-TPSHPSPPSHTPTPSTPSHTPTPHTPSHTPTPH--- 101
Query: 266 TRPCRLHSRTSLP 304
T PC S S P
Sbjct: 102 TPPCNCGSPPSHP 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,381,088
Number of Sequences: 28952
Number of extensions: 451256
Number of successful extensions: 1992
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1954
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -