Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30345
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    37   0.003
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    36   0.006
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    33   0.054
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    31   0.16 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    28   1.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   2.0  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   4.7  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   6.2  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.2  

>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 35/181 (19%), Positives = 75/181 (41%), Gaps = 10/181 (5%)
 Frame = -1

Query: 674 FYGTDVYMFTVITT-------LDVLRLVATVSGIYITSRVKRRSMMLI---FVSLNIIVN 525
           +YGT V+  T + +       LD +    T  G+++     RR  ++I   + S+   + 
Sbjct: 286 YYGTQVFKGTGMESPYLASLILDAVNFGCTFGGLFVLEYCGRRVPLIIGGVWQSICFFIY 345

Query: 524 LSIAGYIYARQRRVLPFDHLAIGLFLHHFLYFIIGAGPMPLSGIITGEIFPLADRGLCSI 345
            ++      R+         A+ +       F       P + +I GE +P+  R  C+ 
Sbjct: 346 AAVGNRALTRKNGTSNHRAGAVMIVFSCLFIFSFAQTWGPAAYVIVGESYPIRYRSKCAA 405

Query: 344 ISRITCSIYLFGDIKSAPYLFTIVGVEGVFGLYGLILAYSLVVTLIYLPETKDRTLQEVE 165
           ++  +  ++ F      P++   +G +  +      L  S +VT ++  E+K  TL+E+ 
Sbjct: 406 VATTSNWLWNFLISFFTPFITNSIGFKYGYIFASCNLCAS-IVTFLFAHESKGLTLEEIN 464

Query: 164 D 162
           +
Sbjct: 465 E 465


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 33/179 (18%), Positives = 71/179 (39%), Gaps = 10/179 (5%)
 Frame = -1

Query: 674 FYGTDVYMFTVITT-------LDVLRLVATVSGIYITSRVKRRSMMLI---FVSLNIIVN 525
           +YGT V+  T + +       LD +    T   I++     RR  +++   + S+   + 
Sbjct: 288 YYGTQVFRGTGLNSPFLAALILDAVNFGCTFGAIFVLEYFGRRGPLIVGGVWQSICFFIY 347

Query: 524 LSIAGYIYARQRRVLPFDHLAIGLFLHHFLYFIIGAGPMPLSGIITGEIFPLADRGLCSI 345
            S+      R          A+ +       F       P + +I GE +P+  R  C+ 
Sbjct: 348 ASVGDRALTRPNGTSNHRAGAVMIVFSCLFIFSFAQTWAPAAYVIVGESYPIRYRSKCAA 407

Query: 344 ISRITCSIYLFGDIKSAPYLFTIVGVEGVFGLYGLILAYSLVVTLIYLPETKDRTLQEV 168
           ++  +   + F      P++   +G +  +      L  ++++  ++  ETK  TL+E+
Sbjct: 408 VATASNWFWNFMISFFTPFISNSIGFKYGYVFAACNLCAAIII-FLFAKETKGLTLEEI 465


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 25/91 (27%), Positives = 41/91 (45%)
 Frame = -1

Query: 383 EIFPLADRGLCSIISRITCSIYLFGDIKSAPYLFTIVGVEGVFGLYGLILAYSLVVTLIY 204
           E+FP++ RGL + +S         G   S   L + +   G F LYG +     +  L  
Sbjct: 469 ELFPMSVRGLGTGMSTAVNWAGNLGIGASFLTLMSEITPTGTFALYGGLCFLGWLGALFC 528

Query: 203 LPETKDRTLQEVEDGFRGYAIGEREEALELK 111
            P+  D T++E+ +  + +  G RE    LK
Sbjct: 529 YPDLTDYTIEEIGELLK-HGFGVRESMRHLK 558


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = -1

Query: 407 PLSGIITGEIFPLADRGLCSIISRITCSIYLFGDIKSAPYLFTIVGVEGVFGLYGLILAY 228
           P + +I GE +P+  R  C+ ++      + F      P++   +G +  +      L  
Sbjct: 355 PAAYVIVGESYPVRYRSKCAAVATSANWFWNFLISFFTPFITNSIGFKYGYIFASCNLTG 414

Query: 227 SLVVTLIYLPETKDRTLQEV 168
           + ++ L ++ ETK RTL+E+
Sbjct: 415 AAIIFL-FVHETKGRTLEEI 433


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 203  LPETKDRTLQEVEDGFRGYAIGEREEALELKCNELKDDV 87
            LPE+  R L ++ DGF  Y + E+   L L C  L  DV
Sbjct: 1022 LPESVRRVLGDLPDGFTSYFV-EKFPMLLLHCYHLVKDV 1059


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 197 PVNKLKSRPNYMQESNHTNQKLLRRP 274
           P  K+  RP+ +++ +H + KL RRP
Sbjct: 294 PSPKVSKRPSIVRQDSHDSNKLSRRP 319


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 650 TCKRQCHRKLCG 685
           TCK++CH  LCG
Sbjct: 352 TCKKRCHSGLCG 363


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -1

Query: 317 LFGDI--KSAPYLFTIVGVEGVFGLYGLILAYSLVVTLIYLPETKDRTLQEVEDGFRGYA 144
           L GD   ++ P L     + G  GL+   L   ++  L  +P      +Q + + F   A
Sbjct: 723 LLGDFQKRNVPLLNLENPISGSQGLHYKRLTTDMIHNLFNVPSNSPVNMQAIYNTFSKMA 782

Query: 143 IGEREEAL 120
           +GE  E+L
Sbjct: 783 VGEPMESL 790


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 404 LSGIITGEIFPLADRGLCSIISRITCSIYLFGD 306
           L GI++G    LA  G C     +  S+ + GD
Sbjct: 213 LPGIVSGLTKGLAPNGTCQYFKNVCISLNILGD 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,363
Number of Sequences: 5004
Number of extensions: 60499
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)