Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30344
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0333 - 24481029-24481109,24481185-24481253,24481785-244818...    28   5.5  
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225...    28   5.5  
02_01_0759 - 5628913-5630870,5631023-5631047                           27   9.6  

>04_04_0333 -
           24481029-24481109,24481185-24481253,24481785-24481853,
           24481923-24481944,24482302-24482393,24482688-24482803,
           24482899-24483042,24483287-24483476
          Length = 260

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +3

Query: 54  YDETYINVIKHSVLCHQVQVNPSXGGNRV 140
           YD + +  I+H+++   + +NP+  GNR+
Sbjct: 147 YDPSSMKSIEHAIISSPLGINPTPDGNRI 175


>02_04_0194 +
           20820985-20821027,20822168-20822367,20822477-20822566,
           20822820-20822825,20822866-20823009,20823089-20823580
          Length = 324

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 537 GGRRDNQPSPSEHLHSSHTPDP 472
           GG   N+   ++H H+SHTP P
Sbjct: 168 GGSATNRSGLADHSHNSHTPKP 189


>02_01_0759 - 5628913-5630870,5631023-5631047
          Length = 660

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 302 ISVERCNRSNKSAIVNVRFVCSRLSTPDLSHCLCMEN 412
           +S+E C++   +++  +   C+ L+  DLS C+  +N
Sbjct: 555 VSLEGCSKITDASLFAISENCTELAELDLSKCMVSDN 591


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,441,951
Number of Sequences: 37544
Number of extensions: 324005
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)