Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30343
         (745 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr...    30   1.9  
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ...    29   3.3  
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ...    28   5.7  
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ...    28   5.7  
At1g49100.1 68414.m05505 leucine-rich repeat protein kinase, put...    28   7.5  
At1g43680.1 68414.m05018 hypothetical protein                          28   7.5  
At4g02310.1 68417.m00312 kelch repeat-containing F-box family pr...    27   9.9  

>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
           protein, yeast, PIR:S54389~Contains 'Homeobox' domain
           signature and profile AA305-328
          Length = 602

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 8   FRLWVLKHGQLMTSSEVSAGWSHSASSLICS 100
           F +W+L+H  LM SS++   W H A     S
Sbjct: 315 FSIWLLRHSSLMGSSDIE-NWVHDAKEATMS 344


>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
           repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
           sapiens}; similar to WD repeat protein Srw1
           -Schizosaccharomyces pombe,PID:d1023012
          Length = 475

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 103 LVW-YPHSVTLGEGRSHSAPPVFIYTLGVGQTRPCGKLDALIQFWVIFGYSCSENKTREF 279
           +VW YP    L     HS   +++     GQT   G  D  ++FW +F    S+++  E 
Sbjct: 405 IVWKYPTMSKLATLTGHSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRESEI 464

Query: 280 FVLLY 294
             L +
Sbjct: 465 GALSF 469


>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
           putative similar to SNF2P [Oryza sativa (japonica
           cultivar-group)] GI:23193483; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain; CG donor site annotated
           in one isoform based on protein alignments.
          Length = 870

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 320 IAFNNSSQASKWFTIISCLHEYLYYHSVKLFI 415
           I + + S  S+W+T+   L +Y    +VK+F+
Sbjct: 839 IGYQDGSDRSQWYTVERLLRKYSSIFTVKIFV 870


>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
           putative similar to SNF2P [Oryza sativa (japonica
           cultivar-group)] GI:23193483; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain; CG donor site annotated
           in one isoform based on protein alignments.
          Length = 851

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 320 IAFNNSSQASKWFTIISCLHEYLYYHSVKLFI 415
           I + + S  S+W+T+   L +Y    +VK+F+
Sbjct: 820 IGYQDGSDRSQWYTVERLLRKYSSIFTVKIFV 851


>At1g49100.1 68414.m05505 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 888

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 329 NNSSQASKWFTIISCLHEYLYYHSVKL-FILENKTRNFNIVIFNQIY 466
           +N +    W    S    ++Y H  +L  +L N+TR FN+++  ++Y
Sbjct: 258 DNGTWEFPWSLEDSTTRFHIYLHFAELQTLLANETREFNVLLNGKVY 304


>At1g43680.1 68414.m05018 hypothetical protein
          Length = 247

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 317 NLFINWIKYNNTKNSRV-LFS-LHEYPKITQN*IRASNFPH 201
           N    W +  N++NS +  +S LH++P ++ N   A N PH
Sbjct: 135 NSLNRWDQEINSQNSNISTYSPLHDFPVVSWNFYTAGNLPH 175


>At4g02310.1 68417.m00312 kelch repeat-containing F-box family
           protein contains Pfam PF00646: F-box domain; contains
           Pfam PF01344 : Kelch motif;
          Length = 349

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +2

Query: 383 YLYYHSVKLFILENKTRNFNIV---IFNQIYKEILL 481
           Y+YYH+V L   E+K + +++V    FN ++  I +
Sbjct: 251 YMYYHNVGLMWYESKEKQWSVVHGLEFNGVFNSIAI 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,251,996
Number of Sequences: 28952
Number of extensions: 374053
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)