Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30342
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_21632| Best HMM Match : Keratin_B2 (HMM E-Value=1.9) 30 1.7
SB_49622| Best HMM Match : E-MAP-115 (HMM E-Value=2.4) 29 5.2
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086) 29 5.2
SB_35483| Best HMM Match : DRAT (HMM E-Value=4.7) 29 5.2
SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1) 29 5.2
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0) 28 9.0
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 36.3 bits (80), Expect = 0.026
Identities = 33/114 (28%), Positives = 41/114 (35%), Gaps = 2/114 (1%)
Frame = +3
Query: 72 CTQTGAGRFADDDDTTCQNYTLCVYDTSTLDYLFYNYQCPSTSVFNPNTAMCTDPXXXXX 251
CT+ G +AD + C Y C + + N CP+ FN MC P
Sbjct: 316 CTERQDGNYADSSN--CNLYITC-----SNGFTIANRHCPTGLAFNEAIGMCDYPSNVPG 368
Query: 252 XXXXXXXXXXXE--DGYIADPSSTNCSSYIECVGINGTFTETTYTCPDNTFYDP 407
E DG D S NC +I C NG TCP T +DP
Sbjct: 369 CSGSSGSGFCHEKSDGNYKD--SGNCHGFIMC--SNGHTYH--MTCPGQTNFDP 416
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +3
Query: 78 QTGAGRFADDDDTTCQNYTLCVYDTSTLDYLFYNYQCPSTSVFNPNTAMCTDP 236
Q G A+ D Q+ C S +++ Y+ CP FNP T C +P
Sbjct: 437 QNDGGFCAERSDGDYQDPDACEGFISCSNHITYHMPCPENLRFNPTTKHCDNP 489
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 2/116 (1%)
Frame = +3
Query: 72 CTQTGAGRFADDDDTTCQNYTLCVYDTSTLDYLFYNYQCPSTSVFNPNTAMCTDPXXXXX 251
C + G + D + C + +C + Y+ CP + F+P C D
Sbjct: 378 CHEKSDGNYKDSGN--CHGFIMCSNGHT------YHMTCPGQTNFDPAKKRCED--YDCS 427
Query: 252 XXXXXXXXXXXEDGYIADPSSTNCSSYIECVGINGTFTETTY--TCPDNTFYDPNT 413
+ G+ A+ S + C G TY CP+N ++P T
Sbjct: 428 GRDVAYLTDQNDGGFCAERSDGDYQDPDACEGFISCSNHITYHMPCPENLRFNPTT 483
>SB_21632| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
Length = 137
Score = 30.3 bits (65), Expect = 1.7
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 590 TSIFVLYVCSV*GQHTIIVSL-TSSVRSVCESSGPGTSESFSCIITRRIT--GACVIRLA 420
TS+F C++ + II S T SV VC + E C+++ R+ GAC + +
Sbjct: 12 TSLFPRGACAL---YVIIQSTPTWSVCVVCYHTVLSHEERVRCMLSYRLLLRGACALYV- 67
Query: 419 KGRVWIVKSIIRTSVCGFCECTIYSY 342
I+ S SVC C T+YSY
Sbjct: 68 -----IIPSSPTRSVCVVCYHTVYSY 88
>SB_49622| Best HMM Match : E-MAP-115 (HMM E-Value=2.4)
Length = 313
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 582 IRIVRMFRLRPAHNNSKFDK*CP*CLRIFRPRN 484
IR+V +LRP + DK P LRI PRN
Sbjct: 71 IRLVIPLQLRPGRKGRRGDKRSPWILRIASPRN 103
>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
Length = 627
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = -2
Query: 255 HCIRSWQDRYTLQCSD*TRTSMDIDSCRTNNLKSKYRRRKACSFDKSCHR 106
HC +W D + L+CS +I+ +L+ Y R + + CH+
Sbjct: 491 HCKENWSDHFGLKCS-------EIEKKGEKDLRISYEERMTMAKIRKCHK 533
>SB_35483| Best HMM Match : DRAT (HMM E-Value=4.7)
Length = 512
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 221 CSVRIEHGRRWTLIVVEQII*SRSIVDAKR-VVLTSRVIVIGKSACSGLRTVDGCLNLPN 45
C V IE RR ++ II R +V KR V++ R +VIGK + D C P
Sbjct: 435 CRVVIEK-RRVVIVKRRLIIGKRRVVTGKRRVIIGKRWVVIGKRRVVIGKRPDSCREAPG 493
Query: 44 A 42
+
Sbjct: 494 S 494
>SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1)
Length = 442
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 221 CSVRIEHGRRWTLIVVEQII*SRSIVDAKR-VVLTSRVIVIGKSACSGLRTVDGCLNLPN 45
C V IE RR ++ II R +V KR V++ R +VIGK + D C P
Sbjct: 365 CRVVIEK-RRVVIVKRRLIIGKRRVVTGKRRVIIGKRWVVIGKRRVVIGKRPDSCREAPG 423
Query: 44 A 42
+
Sbjct: 424 S 424
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 15 GIVLILVFCCVWQVQAAVNCTQTGAGRFADDDDTTC-QNYTLCVYDTSTLD 164
G+V +L+ C + ++++C G + TTC + +CV T+D
Sbjct: 5 GLVALLMVCAMLDSASSLSCHSCAVGVDCTETPTTCDEGKDVCVTVNGTID 55
>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
Length = 1465
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +1
Query: 376 TLVRIILFTIQTRPFASRITHAPVIRLVIIQLKLSLVPGPEDSQTLRTLLVKLTIIVCWP 555
T++ II+ TI + T +I ++II + ++++ + + +++ L IIVC+P
Sbjct: 967 TIIIIIIITIIITIIITTTTIIIIIIIIIIIIIITIINTTTTTIIIVIIIIILIIIVCFP 1026
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,303,930
Number of Sequences: 59808
Number of extensions: 494098
Number of successful extensions: 1240
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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