Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30342
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46375.1 68415.m05772 expressed protein                             30   1.8  
At3g44770.1 68416.m04820 hypothetical protein contains Pfam prof...    29   3.2  
At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family pro...    28   7.4  
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ...    27   9.8  

>At2g46375.1 68415.m05772 expressed protein
          Length = 123

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 441 CMCNSTRKGSCLDRKKYY 388
           C C ST++G C+ R+KY+
Sbjct: 72  CSCASTKRGPCIHRRKYW 89


>At3g44770.1 68416.m04820 hypothetical protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 505

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 338 FDVTGTICGARIGDVPVF-GTNGSICGRHIAYVVGRIGTHC 219
           FD+ G +C    G  PVF G N +   R    + GR+G HC
Sbjct: 151 FDIDGKVCIPACGISPVFLGANKN--PRSEVALYGRLGVHC 189


>At1g29900.1 68414.m03654 carbamoyl-phosphate synthase family protein
            similar to carbamoylphosphate synthetase GI:6552726 from
            [Medicago sativa]; contains Pfam profiles PF02786:
            Carbamoyl-phosphate synthase L chain ATP binding domain,
            PF00289: Carbamoyl-phosphate synthase L chain N-terminal
            domain, PF02787: Carbamoyl-phosphate synthetase large
            chain oligomerisation domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = -3

Query: 503  ESSGPGTSESFSCIITRRITGACVIRLAKGRVWIVKSIIRTSVCGFCECTIYSYAFDVTG 324
            E +G  + +S   + T+ I  +C+  +   R W  K   + +VCG   C    YA   +G
Sbjct: 887  EQAGVHSGDSACMLPTQTIPASCLQTI---RTWTTKLAKKLNVCGLMNC---QYAITTSG 940

Query: 323  TI 318
             +
Sbjct: 941  DV 942


>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
           arabinogalactan protein [Arabidopsis thaliana]
           gi|10880495|gb|AAG24277; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 164

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 226 VPILPTTYAM*RPQILPFVPKTGTSPIRAPQI 321
           +P+ P    M  P ++P  P T  SP+  P +
Sbjct: 79  MPMAPPPMPMASPPMMPMTPSTSPSPLTVPDM 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,766
Number of Sequences: 28952
Number of extensions: 307391
Number of successful extensions: 791
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)