Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30341
         (671 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05)                  29   3.4  
SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)                    29   3.4  
SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)                  28   7.9  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_23887| Best HMM Match : Pre-SET (HMM E-Value=0.05)
          Length = 922

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 528 PYLMDVIEVKLPYRRWKKNTVTFFGYTS 611
           P L D I V+   +R+K+ TV F+GY S
Sbjct: 707 PVLADAIWVRYVDQRYKQATVVFYGYES 734


>SB_954| Best HMM Match : Cys_knot (HMM E-Value=3.1)
          Length = 614

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 528 PYLMDVIEVKLPYRRWKKNTVTFFGYTS 611
           P L D I V+   +R+K+ TV F+GY S
Sbjct: 480 PVLADAIWVRYVDQRYKQATVVFYGYES 507


>SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)
          Length = 413

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +3

Query: 237 LFINSDKARQQSLSNIKRKLLDKQR 311
           L   S  + QQSL+NI RKL DK+R
Sbjct: 191 LLTTSPASVQQSLNNILRKLQDKRR 215


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +2

Query: 419 IEHNIQIRHLFSEIYLKLASRSRFASETVIRLLLIFPLFNGCY*SETS 562
           ++HN+Q++ L +   + L     F S  V R+LL   + N C+ S TS
Sbjct: 201 VDHNVQLKFLMTNFRVVLDKTLLFVS--VKRILLEIIVRNACHCSTTS 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,617,563
Number of Sequences: 59808
Number of extensions: 314002
Number of successful extensions: 684
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)