Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30341
         (671 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein ...    32   0.30 
At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p...    27   8.6  

>At5g04270.1 68418.m00419 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 284

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
 Frame = -3

Query: 501 VSEAKR-ERLASFR*ISENKCRICMLCSME*KLNCLWIL*NV-YNNTMAL*IFK-WANTK 331
           V+E ++ ++  +++ +  + CR+C  C ++   +CLWI   V Y N  A  I   +A   
Sbjct: 101 VTETRKCDKCFAYKPLRTHHCRVCRRCVLKMDHHCLWINNCVGYANYKAFFILVFYATVA 160

Query: 330 QLSTTLFFVCLA 295
            + +T+  VC A
Sbjct: 161 SIYSTVLLVCCA 172


>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 534

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 38  SMLVFHHISPLPPLLHYHLISHNFNHLRLFNCHPMVV 148
           S  + HH+SP PP+   H I  + N+  +  C+ ++V
Sbjct: 382 SQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLV 418


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,688,149
Number of Sequences: 28952
Number of extensions: 235301
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)