Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30339
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678...    32   0.58 
01_05_0490 + 22672241-22674679                                         31   0.77 
03_06_0422 + 33818887-33819996                                         31   1.0  
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462     30   1.8  
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247     29   3.1  
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188...    29   4.1  
07_03_1191 + 24690936-24691029,24691184-24691377                       29   4.1  
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643...    29   4.1  
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539...    28   7.2  
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505     28   7.2  
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101...    28   9.5  
08_02_1172 + 24898290-24899141,24900864-24901328                       28   9.5  
02_01_0775 + 5775949-5777385                                           28   9.5  

>03_02_0994 -
           13067254-13067379,13067483-13067521,13067824-13067893,
           13068025-13068116,13068237-13068319,13068590-13068633,
           13068682-13068800,13068883-13068915,13069152-13069239,
           13069364-13069413
          Length = 247

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 44  VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 172
           VC  T++P +QVC+   +C G   CS+   + D   C    LC
Sbjct: 51  VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92


>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +1

Query: 187 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 330
           +P + + T+T  P  L    R+W   + E+VLEQ S    + MP  PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342


>03_06_0422 + 33818887-33819996
          Length = 369

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -3

Query: 431 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 261
           E   ++ER  + E+T SL    + N   E ++L+G       D+  +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206


>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
          Length = 106

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 44  VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 145
           +CRQ +  C   CH++ LC G  + S   P T G
Sbjct: 38  ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70


>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
          Length = 974

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = -3

Query: 479 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 300
           L C + +   +   +  ++       +T   +   Q  T NG  E L   GG   ++ + 
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390

Query: 299 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRVN 210
           GAE  S+ +    T+ +    T T+  G++ N
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKN 422


>12_02_1152 +
           26515422-26515460,26516317-26516454,26518647-26518809,
           26519165-26519213,26519315-26519390,26520348-26520473
          Length = 196

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 221 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSG 51
           S +N+++ RCG    HC  L   +   L       +  H   + E G  GC  DQSG
Sbjct: 20  SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72


>07_03_1191 + 24690936-24691029,24691184-24691377
          Length = 95

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 44  VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 154
           VC++T+  C+Q  CH + L  G T  S    + D  CC
Sbjct: 38  VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75


>02_02_0059 -
           6432945-6433115,6433975-6434061,6434585-6434787,
           6435281-6435392,6435473-6435517,6435622-6435726,
           6435946-6435996,6436026-6436103,6437258-6437313,
           6437784-6437853,6438288-6438392,6438525-6438637,
           6439354-6439534,6439635-6440390
          Length = 710

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 46  LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 219
           +PP   PL+P +PSS+  H    LQ      +  L  +HS      +RP  S  L    L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238

Query: 220 LPNS 231
           +PN+
Sbjct: 239 MPNA 242


>11_01_0662 -
           5389746-5390548,5390727-5391368,5391624-5391659,
           5392314-5392377
          Length = 514

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 440 NSLESEEQQERHHKTEQTHSLRQ 372
           NS+   E QE+ H  E+TH LRQ
Sbjct: 62  NSIFYSESQEQKHVKEETHRLRQ 84


>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
          Length = 213

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 198 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 52
           P+W G   ++ AV G + P+ +G+   ++  P Q+    + W+    VW
Sbjct: 8   PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56


>10_01_0078 -
           1012031-1012084,1012998-1013105,1013610-1013661,
           1013926-1016603
          Length = 963

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 602 NCIPVDAHCRCNTHQSLHHYEGEVSKHSI-PWLSTPDSIH*NLICRM 465
           N I V A+C+    +S  H  GE++K  I P ++  DSI    +CRM
Sbjct: 471 NSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSII-VCLCRM 516


>08_02_1172 + 24898290-24899141,24900864-24901328
          Length = 438

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +1

Query: 46  LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 222
           LPP  + L P            H  QYPP   ++   +H   Q  PS P R +L  L+L 
Sbjct: 40  LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99

Query: 223 P 225
           P
Sbjct: 100 P 100


>02_01_0775 + 5775949-5777385
          Length = 478

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -3

Query: 131 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 15
           GG   +W  Q RV   G  GC     G       + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,998,911
Number of Sequences: 37544
Number of extensions: 465677
Number of successful extensions: 1449
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)