Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30338
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...   293   1e-80
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    25   8.9  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score =  293 bits (720), Expect = 1e-80
 Identities = 133/203 (65%), Positives = 158/203 (77%)
 Frame = +2

Query: 149 ASGATSKDASVTTNMTKAYTVIDHKHDXXXXXXXXXXXXXXXXXVQEGFKTAVVTKLFPT 328
           AS    +   V+T+ +  Y VIDH +D                  + GF TA +TKLFPT
Sbjct: 30  ASSQPLRAKQVSTSESVKYPVIDHTYDAIVVGAGGAGLRATFGLAEAGFNTACITKLFPT 89

Query: 329 RSHTVAAQGGINAALGNMEEDSWLWHMYDTVKGSDWLGDQDAIHYMTKEAPHAVIELDNY 508
           RSHTVAAQGGINAALGNM +D W WH YDTVKGSDWLGDQDAIHYMTKEAP AV+EL+++
Sbjct: 90  RSHTVAAQGGINAALGNMTKDDWRWHFYDTVKGSDWLGDQDAIHYMTKEAPKAVLELEHF 149

Query: 509 GMPFSRTPEGKIYQRAFGGQSLKFGKGGQAHRCCAVADRTGHSLLHTLYGQSLRYDCEYF 688
           G+PFSRT EGKIYQRAFGGQSL++GKGGQA+RC AVADRTGHS+LHTLYGQSL+++  +F
Sbjct: 150 GVPFSRTKEGKIYQRAFGGQSLEYGKGGQAYRCAAVADRTGHSILHTLYGQSLKHNTNFF 209

Query: 689 IEYFALDLLMEDGVCKGCIAINL 757
           IEYFA+DL+ME G C+G IA+NL
Sbjct: 210 IEYFAMDLIMEGGECRGVIAMNL 232


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 573 RDCPPKALW*IFPSGVRENGIP*LSSSITA 484
           R+ PP ++    PSG R+ G+P +S  + A
Sbjct: 357 RENPPISILGTVPSGFRDMGVPVISRKLCA 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,142
Number of Sequences: 5004
Number of extensions: 60271
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)